237 Works

Organisation spatiale de l'économie de l'attiéké dans le district d'Abidjan : opération de recherche 2020-2022

Cette opération de recherche correspond à la réalisation d'une thèse sous le thème « Organisation spatiale de l’économie de l’attiéké dans le District d’Abidjan » par KONE Hobela Petchokpan Denise à l'Institut de Géographie Tropicale de l'Université Félix Houphouët-Boigny (IGT-UFHB), Abidjan Côte d’Ivoire, sous la direction de madame KOFFIE-BIKPO Céline Yolande, Professeur titulaire. Originaire du Sud ivoirien, l’attiéké est devenu un met prisé par les populations ivoiriennes et celles de l’hexagone. L’attiéké, issu des semoules...

Mission ornithologique aux îles Chesterfield, 12-16 décembre 2005

Philippe Borsa

Journal de bord de la campagne PUFFAlis, 18 mars - 02 avril 2017

V. Allain, Philippe Borsa, Anne Lebourges-Dhaussy, Christophe Menkès , Martine Rodier, David Varillon & Mina Vilayleck
Du 18 mars au 02 avril 2017 s'est déroulée la mission PUFFAlis à bord du navire océanographique Alis de l'IRD. Cette campagne s'inscrit dans la continuité d'expéditions océanographiques centrées sur les zones d'alimentation des oiseaux marins, effectuées précédemment en mer (MOMAlis) comme à terre sur la colonie de puffins de Gouaro Deva. Elle est aussi la prolongation des campagnes NECTAlis destinées à étudier la chaîne trophique océanique qui conduit aux thons. Six scientifiques ont embarqué...

Informal waste collectors and aggregators space and activities in Hanoi city, Vietnam, COMPOSE project (2019-2021)

Thai Huyen Nguyen, Thi Thao Trang Le, Thi Hai Yen Nguyen, Ngoc Anh Dinh, Viet Anh Le, Tuan Minh Le, Cong Hung Phan, Tien Tam Nguyen, Dai Cuong Trinh, Ba Xuan Quang La, Khac Hoai Son Do, Vu Minh Chau Pham, Minh Nghia Le & Thai Hoa Nguyen
The system of informal waste collectors and aggregators in Hanoi city (Vietnam) was surveyed in the framework of two projects: the first phase (JEAI Recycurbviet 2017-2020) and the second phase in the framework of the Compose project (2019-2021). The social survey based on questionnaire was carried out in the entire area of in Hanoi city to identify the location of the aggregator warehouse participating to the informal waste collection and recycling in the city. Then,...

Suspended Particulate Matter, E. coli and Enterococci measurements in the Bagre Lake, Burkina Faso

Elodie Robert, Emma Rochelle-Newall, Dayangnéwendé Edwige Nikiema, Hamidou Koudougou, Ali Niaoné, Manuela Grippa & Laurent Kergoat
In order to estimate bacteria and associated pathogens in surface waters (ponds, reservoirs, lakes, rivers) in West Africa, the TELESSAO project uses spatial observation to characterize the occurrence and concentration of suspended matter (SPM). SPM, E. Coli and enterococci measurements were carried out at the Kapore site in the Bagré Lake region (Burkina Faso) between March 2018 and April 2019, at bi-monthly time during the dry season and weekly during the rainy season. The analyzes...

Data for: Seabird-derived nutrients supply modulates the trophic strategies of mixotrophic corals

Martin Thibault, Fanny Houlbreque, Nicolas N Duprey, Noémie Choisnard, David Gillikin, Valentine Meunier, Francesca Benzoni, Andreas Ravache & Anne Lorrain
This data frame presents seawater NOx (nitrate C nitrite) concentrations in seawater, as well as carbon and nitrogen isotope values of seabird guano, Particulate Organic Matter (POM), macroalgae (Halimeda spp.) and coral (Pocillopora damicornis) tissues and symbionts. These values come from samples collected along two coast-ocean transects on the reef flats of Surprise and Huon islands in the D'entrecasteaux Reefs. Samples were collected in March and September 2017 during the POSTBLANCO and TARA ENTRECASTEAUX cruises....

Supplementary information for \"The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major Transcription Activator-Like Effector TalC but does not contribute to disease susceptibility\"

Hinda Doucouré, Florence Auguy, Servane Blanvillain-Baufumé, Sandrine Fabre, Marc Gabriel, Emilie Thomas, Fleur Dambreville, Coline Sciallano, Boris Szurek, Ousmane Koita, Valérie Verdier & Sebastien Cunnac
This dataset contains additional supporting information related to the discovery of an alternative transcriptional target locus of the Xanthomonas oryzae pv. oryzae (Xoo) TalC effector in the rice genome as described in a manuscript submitted for publication. Xoo strains that cause Bacterial Leaf Blight (BLB), limit rice (Oryza sativa) production and require breeding more resistant varieties. Transcription Activator-Like Effectors (TALE) activate transcription to promote leaf colonization by binding to specific plant host DNA sequences termed...

Attaques de requins recensées en Nouvelle-Calédonie (1958-présent)

Claude Maillaud & Philippe Tirard
Tableau récapitulant les attaques de requins sur des humains recensées par les auteurs depuis 1958. Les données utiles à la caractérisation des circonstances des attaques, à l’identification du requin en cause et à la description des blessures des victimes ont été fournies chaque fois que celles-ci étaient disponibles. Les attaques de l’année en cours seront intégrées au tableau par mise à jour de celui-ci au début de l’année suivante. Méthode Ces données ont été recueillies...

France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions

Vincent Vadez & Jérome Bossuet
The CGIAR is undertaking a global reform, oneCGIAR, to deploy faster, at larger scale agricultural innovations for a more inclusive and systemic transformation of smallholder agriculture in the developing countries. France supports this reform and IRD is fully engaged with CGIAR research teams to develop impactful global research programs called initiatives, which will start in 2022 under three science groups: Systems transformation, Resilient Agrifood Systems and Genetic Innovation. The action plan signed between France and...

ECOMED DATABASE SCHEMA

Jerome PEREZ
ECOMED Database structure schema

Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Julie Orjuela, Aurore Comte, Sébastien Ravel, Florian Charriat, Tram Vi, François Sabot & Sébastien Cunnac
CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly. Documentation: https://culebront-pipeline.readthedocs.io/en/2.1.1/ Code development: https://github.com/SouthGreenPlatform/culebrONT The authors acknowledge the IRD i-Trop HPC (South Green Platform) from IRD Montpellier for providing resources that contributed to this work.

HYDROTHIEM observatory (eastern tropical coast of New Caledonia, South West Pacific): water resource observation data, 2018-2021

Pierre Genthon, Caroline Tramier, Quentin Delvienne, Pascal Dumas, Nathalie Rouché, Kavya Wijesurya, Jean-Jérôme Cassan & Angeline Goue
HydroThiem observatory, located in the humid eastern coast of New Caledonia is devoted the study of impact of invasive ungulate species and bushfires on the amount of water resource, erosion and water quality in a catchment used for drinking water. Data from this observatory can be used as a comparison with other catchments submitted to different or similar disturbances

Clés dichotomiques illustrées d'identification des femelles et des larves de moustiques (Diptera : Culicidae) du Burkina Faso, Cap-Vert, Gambie, Mali, Mauritanie, Niger, Sénégal et Tchad

Vincent Robert, E.H. Ndiaye, Nil Rahola, Gilbert Le Goff, Philippe Boussès, D. Diallo, Voahirana Le Goff, Lauriane Mariamé & M. Diallo

Wind erosion, meteorological and wind profile monitoring in a groundnut field in Bambey, Senegal, 2020-2021 (ENCAS project)

Caroline Pierre
In order to measure horizontal flux of aeolian sediment and the main dynamic parameters (wind erosion threshold, aerodynamic roughness length), a set of instruments was set up in February 2020 in the framework of the ENCAS research project. In a groundnut field of about 100 m x 100 m, we installed 5 anemometers (2 dimensional (2D) sonic anemometers WindSonicTM Gill Instruments Ltd) at 0.25m, 0.66m, 1m, 1.5m, and 1.9m agl, a rain gauge (ARG100 Tipping...

Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Julie Orjuela, Aurore Comte, Sébastien Ravel, Florian Charriat, Tram Vi, Francois Sabot & Sébastien Cunnac
Related to CulebrONT software, this dataset includes: - data used to test the software - 2 reports generated by the software : from the test data and from other data - supplementary technical information about CulebrONT pipeline

Microplastic concentrations in riverine environments of Hanoi, Northern Vietnam. COMPOSE (2019-2021) and CounterMEASUREII (2021-2022) projects

Thi Thuy Duong, Thi Phuong Quynh Le, Nhu Da Le, Thi Nhu Huong Nguyen & Emilie Strady
Microplastic (300-5000µm) concentrations were measured in the Red River, the Nhue River (upstream, middle stream and downstream), the To Lich River and the Day River of Hanoi, Northern Vietnam, under the COMPOSE project (2019-2021) and the CounterMEASUREII project (2021-2022). Microplastic were sampled using a 80µm mesh size net from a local boat. The samples were extracted in the laboratory using enzymatic digestion, NaCl density separation and were filtrated on GF-A filter. Then microplastic were observed...

Intense pressure on small and juvenile coral reef fishes threatens fishery production in Madagascar

Harinirina Sandra Ranaivomanana
The dataset includes a sample of fishery data on reef fish catches (catch per fishing trip, fish length, and catch composition at family level), minimal length at maturity for reef fishes, and fisher census in the Bay of Toliara, southwest Madagascar. These data were collected as part of a participatory survey from May 2018 to April 2019 at 8 villages in the Bay of Toliara. Specifically, 4 data files are provided: (1) suivi_part_toliara.xlsx ; (2)...

Evaluation data for a multi-sectoral program to improve the resilience of households in Madagascar

Dang Bahya-Batinda, Yves Kameli, Rindra Randremanana, Leila Masson, Yves Martin-Prevel & Mathilde Savy
Data were collected in southern Madagascar between 2018 and 2019 from a cohort of 600 households. They were collected as part of a project to evaluate a multi-sectoral program set up by the World Food Program (WFP) with the objective of improving the resilience of households in Madagascar. The Committee of Ethics of Biomedical Research of Madagascar approved the survey protocol. A Data Plan Management was prepared, as provided. Data were collected in tree times,...

Native plants reported as threatened by identified alien plants in the global IUCN Red List

Robin Pouteau
This dataset includes 1,407 pairs of threatened native–invasive alien plants extracted from the IUCN Red List of Threatened Species (https://www.iucnredlist.org/). For each pair, the threat category of the threatened native species (NT, VU, EN, CR, EW, EX), its population trend (increasing, stable, decreasing, unknown), whether the native species is restricted to islands (yes, no, partially) and whether the native species has been classified as threatened based exclusively on IUCN-red-list criterion B (restricted geographic range size)...

Soil carbon content, bulk densities, allophane and MIRS data on Aquiares Watershed (Costa Rica)

Tiphaine CHEVALLIER, Kenji FUJISAKI, Olivier ROUPSARD, Florian GUIDAT, Rintaro KINOSHITA, Elias DE MELO VIGINIO FIHLO, Peter LEHNER & Alain ALBRECHT
Data set used for a paper published in SOIL (2019) Short-range-order minerals as powerful factors explaining deep soil organic carbon stock distribution: the case of a coffee agroforestry plantation on Andosols in Costa Rica. Data comprised : Sheet 1 geographical coordinates, elevation of 72 soil profiles located in the watershed of the Aquiares Farm (1km2) ; Sheet 2: measured data for C content, C:N ratio, oxalate and sodium-pryphosphate extractable forms of Al, Fe and Si...

Phytoliths in termite mounds and in the soil environment, India, 2017

D. Bardoni, J-D. Meunier & P. Jouquet
This dataset has been collected thanks to the long-term partnership with Mahatma Gandhi University, India. The dataset holds detailled phytolith counts and statistics.Phytoliths were extracted from termite mounds build by Odontotermes obesus in the Mule Hole long term observatory. Comparison was done between samples collected from the outer-wall of termite mounds and in the soil at 0-5 and 70-120 cm soil layers.

BIM_Îles.qpj

Christian DEPRAETERE
:unav

Analysis of earthworm casts and soils collected over Dong Cao catchment in Northern Vietnam in 2016

N. Bottinelli, P. Jouquet, H. Aroui, M. Mendez & T. Tran Minh
Earthworm casts and their surrounding topsoil were taken in collaboration with the Soils and Fertilizers Research Institute (SFRI) under different vegetation cover at the long term observatory catchment of Dong Cao in Northern Vietnam in 2016. This dataset holds general chemical parameters of soil samples. Dry combustion analysis (CHN) was used to assess organic Carbon (TOC) and Nitrogen (N) concentrations. Natural isotopes Carbon-13 (13C) and Nitrogen (15N) were analyzed by mass spectrometry. Soil analyses have...

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Affiliations

  • Institut de Recherche pour le Développement
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  • National Research Institute for Agriculture, Food and Environment
    2
  • Institute of Ecology and Environmental Sciences Paris
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    1
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