21 Works

Instantiation example of the user centric metadata model - REPHY network

Valentina BERETTA
This example of the proposed use centric metadata model is constructed using the data of Observation and Monitoring Network for Phytoplankton and Hydrology in coastal waters. The dataset [Cellule d'Administration Quadrige², 2017] contains several files of distinct parameters measured between 2006 and 2016 at the French surveillance sites (called REPHY network). However, to give the proof-of-concept illustration of the proposed model, only observations related to the concentration measurements of Pheopigment (i.e. a pigment which is...

Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning

Romain Guyot, Simon Orozco-Arias & Gustavo Isaza
Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes belonging to 108 plant species, classified down to the lineage level. This dataset has been used to train two deep neural networks (one fully connected and one convolutional) for fast classification of elements. Used in lineage-level classification approaches, we obtain a score above 98% of F1-score, precision and recall. In order to classify elements of the ‘LTR_STRUC’ and ‘EDTA’ datasets,...

Informal waste collectors and aggregators space and activities in Hanoi city, Vietnam, COMPOSE project (2019-2021)

Thai Huyen Nguyen, Thi Thao Trang Le, Thi Hai Yen Nguyen, Ngoc Anh Dinh, Viet Anh Le, Tuan Minh Le, Cong Hung Phan, Tien Tam Nguyen, Dai Cuong Trinh, Ba Xuan Quang La, Khac Hoai Son Do, Vu Minh Chau Pham, Minh Nghia Le & Thai Hoa Nguyen
The system of informal waste collectors and aggregators in Hanoi city (Vietnam) was surveyed in the framework of the COMPOSE project (2019-2021). The social survey based on questionnaire was carried out in the entire area of in Hanoi city to identify the location of the aggregator warehouse participating to the informal waste collection and recycling in the city. Then, the collectors and aggregators were interviewed individually to collect information on the space, architectural characteristic of...

Climatic dataset from ICIPE, Nairobi, Kenya, 2020

Francois Rebaudo, Bonoukpoè Mawuko Sokame, Julius Ochieng Obonyo & Paul-André Calatayud
This dataset corresponds to climate data for the year 2020 at ICIPE, Nairobi, Kenya. The data includes temperature, relative humidity, atmospheric pressure in three separate CSV files with approximately one measurement every minute. The first column indicates the date and time in UTC and the second column the measurement made (column names are visible in the header). The measurements were made using a BME680 type sensor calibrated with a DS18B20 temperature probe, and connected to...

Informal waste collectors and aggregators space and activities in Nha Trang city, Vietnam, COMPOSE project (2019-2021)

Thai Huyen Nguyen, Thi Thao Trang Le, Thai Hoa Nguyen, Thi Hai Yen Nguyen, Ngoc Anh Dinh, Viet Anh Le, Tuan Minh Le, Cong Hung Phan, Tien Tam Nguyen, Thi Mo Nguyen, Dai Cuong Trinh, Thi Ngoc Thanh Nguyen, Thi Kim Anh Ninh & Thi Tam Tran
The system of informal waste collectors and aggregators in Nha Trang city (Vietnam) was surveyed in the framework of the COMPOSE project (2019-2021). The social survey based on questionnaire was carried out in the entire area of in Nha Trang city, Khanh Hoa province, to identify the location of the aggregator warehouse participating to the informal waste collection and recycling in the city. Then, the collectors and aggregators were interviewed individually to collect information on...

Dataset of flood event in Houay Pano catchment, Laos on June 16th, 2014

T.H. Le, T. Pommier, O. Ribolzi, B. Soulileuth, S. Huon, N. Silvera & E. Rochelle-Newall
We investigated how overland flow associated to a flood event impacts dissolved organic carbon (DOC) concentration, its optical characteristics and aquatic bacteria community structure in Houay Pano stream, Laos. We collected stream water in upstream and downstream at different stages of the storm flow event to assess the change in DOC concentration and composition and bacterial community. Here we present a series of environmental data, hydrological data and diversity data from the water samples.

Climatic dataset from PROINPA, Khipakhipani, La Paz, Bolivia, 2020

Francois Rebaudo, Franz Callizaya Condori, Reinaldo Quispe Tarqui & Jhenny Flores Huanca
This dataset corresponds to climate data for the year 2020 at Fundación PROINPA, Khipakhipani, La Paz, Bolivia. The data includes temperature, relative humidity, atmospheric pressure in three separate CSV files with approximately one measurement every minute. The first column indicates the date and time in UTC and the second column the measurement made (column names are visible in the header). The measurements were made using a BME680 type sensor calibrated with a DS18B20 temperature probe,...

Daily rainfall in Abidjan district (Côte d'Ivoire) (2015-)

Eric Zahiri, Luc Seguis, Modeste Kacou, Bamory Kamagate, Amidou Dao, Jean-Louis Perrin, Serge Ehouman Koffi & Maurice Guilliod
Daily rainfall from 21 pluviographs located in the District of Abidjan (Ivory Coast) The daily rain is recorded with tipping buckets rain gauge (tilting of the bucket for 0.5mm) Précis Mécanique® (rain interception cone 1.5m from the ground and with an area equal to 400 cm2). Tipping bucket dates (day month year hour minute second) are recorded in a HOBO Pendant® UA-003-64 data logger. The rain gauge data are collected monthly. During this visit, the...

Replication data for: Migration response to drought in Mali

Sandrine Mesple-Somps, Gilles Spielvogel, Assa Doumbia Gakou, Arouna Sougane, Esther Delesalle & Flore Gubert
The project consists in combining population census data and climate data to estimate the volume of migrations induced by the drought events that have hit Mali since the late 1980s (A WP describing the research objectives, related literature, methodology and main results can be found here: https://ideas.repec.org/p/dia/wpaper/dt202001.html). All the datasets used in the paper are provided here, i.e. data on net migration rates and international emigration rates at the locality level computed from 1987, 1998...

Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali

N'dji Dit Jacques Dembele
On May 16 2019, an intense rainfall event led to devastating floods in Bamako, Mali. In the immediate aftermath of the flood event, the Laboratoire Hommes-Peuplements–Environments (Labo-HoPE research laboratory) collected data about the flooding process and mechanism as well as the economic losses and damages. This map represents the extension of the flooded areas delineated in the field with the help of the local communities. The field data was processed using the Field Papers application...

Water level in the Aghien lagoon and in the rivers linked to the lagoon (2015-)

Bamory Kamagate, Luc Seguis, Jean-Louis Perrin, Maurice Guilliod & Serge Ehouman Koffi
To face the difficulties involved in supplying freshwater to Abidjan (Côte d’Ivoire), the Aghien Lagoon is a potential resource for production of drinking water. A hydro-meteorological network was installed with the objective of assessing the sustainability of the lagoon in terms of both quantity and quality. Each water level station is equipped with a piezometric probe associated to a HYDREKA standalone data recorder with a communication capability (Octopus LX). A manually read staff gauge is...

5 minutes rainfall in Abidjan district (Côte d'Ivoire) (2015-)

Eric Zahiri, Luc Seguis, Modeste Kacou, Bamory Kamagaté, Amidou Dao, Jean-Louis Perrin, Serge Ehouman Koffi & Maurice Guilliod
5-minutes rainfall from 21 pluviographs located in the District of Abidjan (Ivory Coast) The rain is recorded with tipping buckets rain gauge (tilting of the bucket for 0.5mm) Précis Mécanique® (rain interception cone 1.5m from the ground and with an area equal to 400 cm2). Tipping bucket dates (day month year hour minute second) are recorded in a HOBO Pendant® UA-003-64 data logger. The rain gauge data are collected monthly. During this visit, the devices...

15 minutes flow in the rivers linked to the Aghien lagoon (2015-)

Bamory Kamagate, Luc Seguis, Jean-Louis Perrin, Maurice Guilliod & Serge Ehouman Koffi
To face the difficulties involved in supplying freshwater to Abidjan (Côte d’Ivoire), the Aghien Lagoon is a potential resource for production of drinking water. A hydro-meteorological network was installed with the objective of assessing the sustainability of the lagoon in terms of both quantity and quality. The automatic measurement of the water level is converted into a flow rate by means of a flow height rating curve established by gauging.

Dataset describing soil sheeting properties produced by termites sampled in 21 countries from 2015 to 2020

P. Jouquet, A. Harit, C. Tiago, D. Donoso, H.F. Da Cunha, D. Eldridge, C. Choosai, J-L. Janeau, J. Van Thuyne, A. Maingan, O. P. Pinzon Florian, O. Malam Issa, M. Labiadh, R. Muon, V. Ann, S. Cheik, S. Fall, S. Traoré, T. Chouvenc, T. Tran Minh, A. Auclerc, H. Huot, D. Sillam-Dussès & S. Dupont
Dataset describing sheeting properties made by termites (names, and feeding and building categories are given) sampled in 34 study sites, including M-Tropics observatories, from 19 countries. Data coming from 15 published studies are also given, for a total of 49 sites and 21 countries. The dataset include the locations (site names, countries, GPS coordinates, mean annual precipitations ‚MAP‘) and soil properties (electrical conductivity in µS cm-1, pH, C content in %, soil aggregate stability (in...

Investigation of leptospirosis in rodents, Mahé, Seychelles, 2013-2014

Leon Biscornet, Christophe Révillion, Sylvaine Jégo, Erwan Lagadec, Yann Gomard, Gildas Le Minter, Gérard Rocamora, Vanina Guernier-Cambert, Julien Mélade, Koussay Dellagi, Pablo Tortosa & Vincent Herbreteau
This dataset is related to the description of rodents (morphology, status of leptospirosis infection and environment around the capture sites) collected in Mahé, the main island of Seychelles, and analyzed in the framework of the LEPTOI 32913 Project (FEDER INTERREG V program). It includes two small rodent species (Rattus norvegicus and Rattus rattus), their leptospirosis infection status (determined through RT-qPCR or culture on their kidney samples), their GPS location, rainfall information (interpolated from weather stations),...

Water Quality - Aghien Lagoon and its catchment (Ivory Coast) (2015-2016)

Jean-Louis Perrin, , Séguis Luc, , , Seidel Jean-Luc &
Measurement campaigns of the water quality of the Aghien Lagoon and its main tributaries between 2015 and 2016, carried out under the program "The Aghien lagoon: a sustainable source of drinking water for the city of Abidjan? (2015-2018)" Nine Excel data files corresponding to the 9 sampling sites, containing the results of the 10 measurement campaigns. The list of measured parameters can be viewed in the "ORIESA_MeasuredParameters_ParametresMesures" file associated with the data files.

Géographie de l'économie de plantation durable en Côte d'Ivoire : introduction et soutenabilité de l'agriculture biologique du Cacao dans les terroirs paysans de la zone forestière ivoirienne (2019-2022)

Kouadio Apolinaire Kouassi
Cette opération de recherche correspond à la réalisation d'une thèse sous le thème « Géographie de l'économie de plantation durable en Côte d'Ivoire : introduction et soutenabilité de l'agriculture biologique du Cacao dans les terroirs paysans de la zone forestière ivoirienne » par Kouassi Kouadio Apolinaire à l'Institut de Géographie Tropicale de l'Université Félix Houphouët Boigny (IGT-UFHB), Abidjan Côte d’Ivoire, sous la direction de madame Koffi-Didia Adjoba Marthe, Maître de conférences. La zone de l'étude...

Comparison of the nest organization and soil properties of Microcerotermes pakistanicus and Odontotermes obesus constructions in the Western Ghats, India

A.K. Harit, E.V. Ramasamy, N. Babu, R.M.J. Pillai, N. Bottinelli, S. Cheik & P. Jouquet
Dataset describing the soil properties (termite nests and sheetings) and nest organization of two common species in Kerala, India: Odontotermes obesus and Microcerotermes pakistanicus. Soil properties included: pH, electrical conductivity (uS cm-1), soil particle size distribution (clay, silt, sand, in %), and C (%), N (%), anion (Cl, F, NO3, SO4, in ppm) and cation (Na, K, Mg, Ca, in ppm) contents . Nest organization was measured using X-ray computed tomography and measures consisted in...

Daily flow in the rivers linked to the Aghien lagoon (2015-)

Bamory Kamagate, Luc Seguis, Jean-Louis Perrin, Maurice Guilliod & Serge Ehouman Koffi
To face the difficulties involved in supplying freshwater to Abidjan (Côte d’Ivoire), the Aghien Lagoon is a potential resource for production of drinking water. A hydro-meteorological network was installed with the objective of assessing the sustainability of the lagoon in terms of both quantity and quality. The automatic measurement of the water level is converted into a flow rate by means of a flow height rating curve established by gauging.

Informal waste collectors and aggregators space and activities in Buon Ma Thuot city, Vietnam, COMPOSE project (2019-2021)

Thai Huyen Nguyen, Minh Vu Ngo, Thi Thao Trang Le, Thai Hoa Nguyen, Thi Hai Yen Nguyen, Ngoc Anh Dinh, Viet Anh Le, Tuan Minh Le, Cong Hung Phan, Tien Tam Nguyen, Thi Mo Nguyen, Dai Cuong Trinh & Hoang Phuong Nguyen
The system of informal waste collectors and aggregators in Buon Ma Thuot city (Vietnam) was surveyed in the framework of the COMPOSE project (2019-2021). The social survey based on questionnaire was carried out in the entire area of in Buon Ma Thuot city, Dak Lak province, to identify the location of the aggregator warehouse participating to the informal waste collection and recycling in the city. Then, the collectors and aggregators were interviewed individually to collect...

Supplementary information and source code for \"An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection\"

Ganna Reshetnyak, Jonathan M. Jacobs, Florence Auguy, Coline Sciallano, Lisa Claude, Clemence Medina, Alvaro J. Perez-Quintero, Aurore Comte, Emilie Thomas, Adam Bogdanove, Ralf Koebnik, Boris Szurek, Anne Dievart, Christophe Brugidou, Severine Lacombe & Sebastien Cunnac
This dataset contains additional supporting information and source code related to the discovery of Xanthomonas-induced small RNAs (xisRNAs) as described in the Related Publication. Deep small RNA (sRNA) sequencing analysis discovered a class of sRNA in rice (Oryza sativa) specifically associated with foliar diseases caused by Xanthomonas oryzae pathovars. A set of 163 xisRNAs loci were distinctively upregulated in response to various bacterial strains at an early stage of infection. Most xisRNA loci overlap with...

Registration Year

  • 2021
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Resource Types

  • Dataset
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