The need of purified biomolecules, such as proteins or antibodies, has required the biopharmaceutical industries to look for new recovering solutions to reduce time and costs of bioseparations. In the last decade, the emergent field of membrane chromatography has gained attention as possible substituent of the common used protein A affinity chromatography for bioseparations. In this scenario, gold nanoparticles can be used as means for offering affinity, mainly because of their biocompatible and reversible binding...

Electrospray ionization mass spectrometry (ESIMS) is widely used to characterize neutral and ionic species in solvents. Typically, electrical, thermal, and pneumatic potentials are applied to create electrosprays from which charged ionic species are ejected for downstream analysis by mass spectrometry. Most recently, ESIMS has been exploited to investigate ambient proton transfer reactions at air-water interfaces in real time. We assessed the validity of these experiments via complementary laboratory experiments. Specifically, we characterized the products of...

Membrane desalination has become one of the most important desalination technologies used in the world. It provides high water quality for numerous applications and it demonstrates excellent desalination efficiency. One of the most troubling drawbacks of membrane desalination is membrane fouling. It decreases the performance of the membranes and increases the energy requirement. Two of the most important causes of fouling are microbes and organic matter. Hence, to maintain an optimized desalination performance, routine inspection...

An extensive reliance on technology, an abundance of data, and increasing processing requirements have imposed severe challenges on computing and data processing. Moreover, the roadmap for scaling electronic components faces physical and reliability limits that hinder the utilization of the transistors in conventional systems and promotes the need for faster, energy-efficient, and compact nano-devices. This work thus capitalizes on emerging non-volatile memory technologies, particularly the memristor for steering novel design directives. Moreover, aside from the...

The use of Reverse osmosis (RO) membranes have been significantly increasing in water desalination, and the main operational obstacle in RO desalination plants is membrane fouling. Among other solutes, dissolved biopolymers, such as polysaccharides can lead to severe membrane fouling especially with the addition of calcium ions because of the complexation formation between the surface of membrane and foulants materials. However, this complexation can also take place in the feed bulk, resulting in foulants aggregates...

This dissertation introduces a novel fast direct solver and preconditioner for the solution of block tridiagonal linear systems that arise from the discretization of elliptic partial differential equations on a Cartesian product mesh, such as the variable-coefficient Poisson equation, the convection-diffusion equation, and the wave Helmholtz equation in heterogeneous media. The algorithm extends the traditional cyclic reduction method with hierarchical matrix techniques. The resulting method exposes substantial concurrency, and its arithmetic operations and memory consumption...

A recording of the defense presentation for this dissertation is available at: http://hdl.handle.net/10754/625197

Data cleansing approaches have usually focused on detecting and fixing errors with little attention to big data scaling. This presents a serious impediment since identify- ing and repairing dirty data often involves processing huge input datasets, handling sophisticated error discovery approaches and managing huge arbitrary errors. With large datasets, error detection becomes overly expensive and complicated especially when considering user-defined functions. Furthermore, a distinctive algorithm is de- sired to optimize inequality joins in sophisticated error...

Most natural gas fields in Saudi Arabia contain around 10 mol.% carbon dioxide. The present technology to remove carbon dioxide is performed by chemical absorption, which has many drawbacks. Alternatively, membrane-based gas separation technology has attracted great interest in recent years due to: (i) simple modular design, (ii) potential cost effectiveness, (iii) ease of scale-up, and (iv) environmental friendliness. The state-of-the-art membrane materials for natural gas sweetening are glassy cellulose acetate and polyimide, which were...

The past decade witnessed the rapid development of III-nitride light-emitting diodes (LEDs) and laser diodes (LDs), for smart lighting, visible-light communication (VLC), optical storage, and internet-of-things. Recent studies suggested that the GaN-based LDs, which is free from efficiency droop, outperform LEDs as a viable high-power light source. Conventionally, the InGaN-based LDs are grown on polar, c-plane GaN substrates. However, a relatively low differential gain limited the device performance due to a significant polarization field in...

The majority of state-of-the-art polymeric membranes for industrial or medical applications are fabricated by phase inversion. Complexation induced phase separation (CIPS)—a surprising variation of this well-known process—allows direct fabrication of hybrid membranes in existing facilities. In the CIPS process, a first step forms the thin metal-rich selective layer of the membrane, and a succeeding step the porous support. Precipitation of the selective layer takes place in the same solvent used to dissolve the polymer and...

In this dissertation, we present two research projects, namely finite-state mean-field games and the Hughes model for the motion of crowds. In the first part, we describe finite-state mean-field games and some applications to socio-economic sciences. Examples include paradigm shifts in the scientific community and the consumer choice behavior in a free market. The corresponding finite-state mean-field game models are hyperbolic systems of partial differential equations, for which we propose and validate a new numerical...

Recent years have been marked by an enormous growth of wireless communication networks and an extensive use of wireless applications. In return, this phenomenal expansion induced more concerns about the privacy and the security of the users. Physical layer security is one of the most promising solutions that were proposed to enhance the security of next generation wireless systems. The fundamental idea behind this technique is to exploit the randomness and the fluctuations of the...

Stochastic Differential Equations (SDE) offer a rich framework to model the probabilistic evolution of the state of a system. Numerical approximation methods are typically needed in evaluating relevant Quantities of Interest arising from such models. In this dissertation, we present novel effective methods for evaluating Quantities of Interest relevant to computational finance when the state of the system is described by an SDE.

Ubiquitin-like with PHD and RING Finger domains 1 (UHRF1) is a nuclear protein that associates with chromatin. Regardless of the various functions of UHRF1 in the cell, one of its more important functions is its role in the maintenance of DNA methylation patterns by the recruitment of DNMT1. Studies on UHRF1 based on this function have revealed the importance of UHRF1 during the cell cycle. Moreover, based on different studies various factors were described to...

A sustainable supply of fresh water for the human population is a global concern. Intriguingly, about 70% of the total fresh water consumed in the world annually is claimed by agriculture alone; this fraction is even higher in the Middle East and North Africa (MENA) region, where natural regeneration of groundwater is the slowest. Thus, there is a serious need for innovative materials and technologies to enhance the efficiency water usage in agriculture. To this...

Aqueous industrial effluents containing organic pollutants, such as textile dyes and crude oil, represent environmental and human health concerns due to their toxicity and possible carcinogenic effects. Adsorption is the most promising wastewater treatment method due to its efficiency, ease of operation, and low cost. However, currently used adsorbents have either high regeneration costs or low adsorption capacities. In this work, new organic/inorganic hybrids based on hollow silica microspheres were successfully synthesized, and their ability...

Biodiesel is a renewable fuel alternative to petroleum Diesel, biodiesel has similar characteristic but with lesser exhaust emission. In this study, transesterification of Karaya oil is examined experimentally using a batch reactor at 100-140°C and 5 bar in subcritical methanol conditions, residence time from 10 to 20 minutes, using a mass ratio 6 methanol-to-vegetable oil. Methanol is used for alcoholysis and sodium hydroxide as a catalyst. Experiments varied the temperature and pressure, observing the effect...

Recuperated Brayton Cycle (RBC) has attracted the attention of research scientists not only as a possible replacement for the steam cycle at nuclear power plants but also as an efficient bottoming cycle for waste heat recovery and for concentrated solar power. RBC’s compactness and the ease at which it can be integrated into existent power plants for waste heat recovery require few modifications. Methane, carbon dioxide and trifluoromethane are analyzed as possible working fluids. This...

Corals form a symbiotic relationship with photosynthetic zooxanthellae from the genus Symbiodinium; the breakdown of this symbiosis results in the phenomenon known as coral bleaching. This relationship is especially vulnerable to high temperature stress, although corals may survive if they have resistant types of symbionts, or switch their community composition towards them. To assess the variation of the symbiont community in different environmental conditions, I recorded the temperature and collected samples from six scleractinian coral...

The purpose of this thesis is to solve unsteady two-dimensional compressible Navier-Stokes equations for a moving mesh using implicit explicit (IMEX) Runge- Kutta scheme. The moving mesh is implemented in the equations using Arbitrary Lagrangian Eulerian (ALE) formulation. The inviscid part of the equation is explicitly solved using second-order Godunov method, whereas the viscous part is calculated implicitly. We simulate subsonic compressible flow over static NACA-0012 airfoil at different angle of attacks. Finally, the moving...

Latest developments in electron microscopy (EM) technology produce high resolution images that enable neuro-scientists to identify and put together the complex neural connections in a nervous system. However, because of the massive size and underlying complexity of this kind of data, processing, navigation and analysis suffer drastically in terms of time and effort. In this work, we propose the use of state-of- the-art navigation techniques, such as dynamic insets, built on a peta-scale volume visualization...

Feature selection is the first task of any learning approach that is applied in major fields of biomedical, bioinformatics, robotics, natural language processing and social networking. In feature subset selection problem, a search methodology with a proper criterion seeks to find the best subset of features describing data (relevance) and achieving better performance (optimality). Wrapper approaches are feature selection methods which are wrapped around a classification algorithm and use a performance measure to select the...

Volume rendering systems are designed to provide means to enable scientists and a variety of experts to interactively explore volume data through 3D views of the volume. However, volume rendering techniques are computationally intensive tasks. Moreover, parallel distributed volume rendering systems and multi-threading architectures were suggested as natural solutions to provide an acceptable volume rendering performance for very large volume data sizes, such as Electron Microscopy data (EM). This in turn adds another level of...

Modeling of transcription factor binding sites (TFBSs) and TFBS prediction on genomic sequences are important steps to elucidate transcription regulatory mechanism. Dependency of transcription regulation on a great number of factors such as chemical specificity, molecular structure, genomic and epigenetic characteristics, long distance interaction, makes this a challenging problem. Different experimental procedures generate evidence that DNA-binding domains of transcription factors show considerable DNA sequence specificity. Probabilistic modeling of TFBSs has been moderately successful in identifying...