110 Works

pMTB-BAct::(CCR5-BS) PSD95.FingR+eGFP+CCR5 ZF vector sequence

William Dempsey, Zhuowei Du, Anna Nadtochiy, Karl Czajkowski, Colton Smith, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Thai Truong, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Anna Nadtochiy, Karl Czajkowski, Colton Smith, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Thai Truong, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Anna Nadtochiy, Karl Czajkowski, Colton Smith, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Thai Truong, Carl Kesselman, Scott Fraser & Don Arnold

Extended Data Figure 5: An algorithm for semi-automated identification of synapses from raw SPIM data.

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Redistribution of synapses following memory formation in larval zebrafish

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Microscopy conditions (Figure 3, Extended Data Figure 5)

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

TFC Extinction Experiments (Figure 1g, h)

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

PSD-95 FingR Colocalization with Dendritic Spines (Extended Data Figure 3)

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

TFC Data for Size and Age Dependence Analysis (Extended Data Figure 1f, 4a, b)

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Extended Data Figure 7: Spines sampled within a 14-16 dpf zebrafish brain tend to move less than 4 µm in five hours.

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Figure 6: Cells in the anterolateral pallium project dendrites within the region of synapse gain.

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Multi-dimensional Newsvendor (MDNV)

This is an instance from http://simopt.org/wiki/index.php?title=Multi-dimensional_Newsvendor_Problem. The example is adapted from the article Kim, S. (2006). Gradient-Based Simulation Optimization. Proceedings of the 2006 Winter Simulation Conference, 159-167. For this instance, we compare the performance of different stochastic algorithms: Stochastic Approximation(SA), Robust Stochastic Approximation(RSA) and Stochastic Decomposition(SD). To run the experiment of SA/RSA, please download the input file(model file for the subproblem) and the program files. Both algorithms run 10 replications, while all the parameters are...

Figure 1: Altered activity in the anterolateral pallium of the larval zebrafish following tail flick conditioning (TFC), a robust classical conditioning paradigm.

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

LEO-Wyndor

The name Wyndor and the production part of this problem is borrowed from a very popular OR textbook (Hillier and Lieberman (2012)). Our example extends the original Wyndor model to one in which the production plan is to be made while bearing in mind that the allocation of the advertising time slots affects sales of Wyndor products (two types of doors), and the final production plan will be guided by firm orders (sales) in the...

MnM2

This instance is the same with MnM instance. However, for this instance, the MIP problem is solved by Cplex in python. Using data on "likes" from the Internet (e.g., epicurious.com), we create an objective function based on ideas from matrix completion (a Netflix competition), and then formulate a MIP problem whose objective is the sum of preferences of the roommates.

APV Treatment Experiments (Figure 1f)

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Extended Data Figure 4: PSD-95.FingR expression does not alter the learning ability of 14-16 dpf zebrafish larvae.

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Figure 1: Tail flick conditioning (TFC), a robust classical conditioning paradigm for larval zebrafish.

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

Figure 2: Neurons within the anterolateral pallium respond to the CS in learner fish and the US in naïve fish.

William Dempsey, Zhuowei Du, Thai Truong, Karl Czajkowski, Colton Smith, Anna Nadtochiy, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Carl Kesselman, Scott Fraser & Don Arnold

William Dempsey, Zhuowei Du, Anna Nadtochiy, Karl Czajkowski, Colton Smith, Andrey Andreev, Drew Robson, Jennifer Li, Serina Applebaum, Thai Truong, Carl Kesselman, Scott Fraser & Don Arnold

Registration Year

  • 2020
    76
  • 2019
    34

Resource Types

  • Dataset
    110