683 Works

Respirometry data for pelagic crustaceans, cephalopods, and fish collected on R/V Sikuliaq cruise SKQ201701S from January to February 2017

Brad Seibel, Christopher Roman & Karen Wishner
This dataset comprises results of respirometry experiments conducted at sea using pelagic crustaceans, cephalopods, and fish collected on R/V Sikuliaq cruise SKQ201701S from January to February 2017. Experimental animals were collected using either a modified tucker trawl or MOCNESS.

Large particulate matter concentration, biovolume, and sized distribution in the Pacific Ocean from 2015-04-11 to 2015-06-18 measured by the Underwater Vision Profiler 5 (UVP5) on the P16N Repeat Hydrography cruise aboard the NOAA Ship Ronald H. Brown

Andrew M. McDonnell
This dataset includes large particulate matter concentration, biovolume, and sized distribution in the Pacific Ocean from 2015-04-11 to 2015-06-18 measured by the Underwater Vision Profiler 5 (UVP5) on the P16N Repeat Hydrography cruise aboard the NOAA Ship Ronald H. Brown.

Benthic cover data from survey sites on Caribbean coral reefs, 2008-2012 (Sponge Chem Ecology project)

Joseph Pawlik & Tse-Lynn Loh
This dataset contains benthic cover survey results that were conducted on coral reefs at 69 sites from 12 countries across the Tropical Northwestern Atlantic (Caribbean) marine province from 2008 to 2012.

Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016

James J. Morris & Matt Ashworth
Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures. Sequence data is available from the NCBI SRA archive, BioProject PRJNA706454.

Benthic community cover and counts in Sitka Sound and Torch Bay, Alaska from 1988 to 2019

Kristy Kroeker, Peter T. Raimondi & James A. Estes
This dataset is part of a suite of studies conducted in Southeast Alaska to determine how kelp communities respond to variable environmental conditions arising from seasonal variability as well as changing ocean temperature and acidification conditions. The benthic communities in Sitka Sound and Torch Bay, Alaska were investigated at 19 sites from 1988 through 2019. Twenty quadrats were placed at random locations along a transect line, then benthic species were counted or the percent cover...

Survey to quantify habitat availability for juvenile T. hardwicke in Moorea, French Polynesia from 2005-2007 (CDD_in_Reef_Fish project)

Shane Geange
This dataset is from a study examining the influence of structural refuge, competition and their interaction on the early post-settlement survival of transplanted Thalassoma hardwicke (the sixbar wrasse).

Nutrient and chlorophyll analyses from surface samples collected underway on board container ships during basin-wide transects of the North Pacific Ocean from Hong Kong to Long Beach, CA from 2009-2012

Hilary I. Palevsky & Paul Quay
Surface nutrient and chlorophyll analyses were performed on samples collected on board commercial container ships from April 2009 through December 2012. Samples were collected from the underway seawater system during basin-wide transects of the North Pacific Ocean while traversing from Hong Kong to Long Beach, California.

High resolution mass spectra for amphi-enterobactin related siderophores from Vibrio harveyi from laboratory experiments in 2017

Francois Morel
High resolution mass spectra for amphi-enterobactin related siderophores from Vibrio harveyi from laboratory experiments in 2017. These data were published in McRose et al. (2018, Figs. S1, S4).

Siderophore concentrations found in supernatants of Rhodopseudomonas palustris str. CGA009 grown under different aerobic and anaerobic conditions from laboratory experiments in 2016

Francois Morel, Oliver Baars & Xinning Zhang
Siderophore concentrations found in supernatants of Rhodopseudomonas palustris str. CGA009 grown under different aerobic and anaerobic conditions from laboratory experiments in 2016. These data were published in Baars et al. (2018, Fig. 3).

Octocoral recruitment surveys on transects at 5 sites on the south shore of St. John, US Virgin Islands, 2014-2019.

Howard Lasker
This dataset includes species identifications and sizes from octocoral recruitment surveys conducted on transects at five sites on the south shore of St. John, US Virgin Islands from 2014-2019.

Locations of mapped polyps on experimental tiles with different levels of turf algae cover during an in-situ experiment in St. John, US Virgin Islands in August and September of 2019

Christopher Wells, Angela Martinez-Quintana, Kaitlyn Tonra & Howard Lasker
Locations of mapped polyps on experimental tiles of three treatments (scrubbed, reef, protected).

Empirical orthogonal functions (EOFs) and benthic communities at Wailupe and Black Point on Oahu, Hawai'i

Florybeth F. La Valle & Craig E. Nelson
Empirical orthogonal functions (EOFs) and benthic communities at Wailupe and Black Point on Oahu, Hawai'i. Full methods describing this dataset are found in La Valle et al. 2020 (doi:10.1002/lno.11596)

DOC and TOC of seawater collected during CCGS John P. Tully cruises in the northeast Pacific Ocean from Vancouver Island to Station P from 2018 to 2020

Sophia Johannessen, Andrea J. Fassbender, Jacqueline S. Long & Cynthia Wright
This dataset includes observations of dissolved organic carbon and total organic carbon from seawater samples collected during CCGS John P. Tully cruises from 2018 to 202 in the northeast Pacific Ocean from Vancouver Island to Station P.

ZooSCAN images of zooplankton collected during BATS MOCNESS tows during R/V Atlantic Explorer cruises AE1614, AE1712, AE1830, and AE1819 in the vicinity of the Bermuda Atlantic Time-series Study from 2016 to 2018

Leocadio Blanco-Bercial, Amy Maas & Hannah Gossner
ZooSCAN images from BATS MOCNESS tows during R/V Atlantic Explorer cruises AE1614, AE1712, AE1830, and AE1819 in the vicinity of the Bermuda Atlantic Time-series Study (BATS) in July of 2016, 2017, and 2018 as well as October 2018 (eight casts in total, 63 discrete nets). These data were published in Maas et al. (2021).

Coral cover, density, and recruits averages per year in St. John, US Virgin Islands from 2007-2016

Peter J. Edmunds
This study was carried out on shallow reefs along the south coast of St. John, which have been monitored since 1987, and studied since the 1950’s. Three aspects of the time-series analyses are utilized, and the study period exploited concurrent sampling of coral cover, coral recruitment, and the dynamics of small corals (colonies ≤ 40-mm diameter). These aspects of community structure were studied at 5–6 sites at 5–9-m depth between Cabritte Horn and White Point.

Water temperature records for Acropora hyacinthus coral colonies located in either patch or fore reefs of the Palau Archipeglo from November 2017 to January 2020

Stephen R. Palumbi
Water temperature records for Acropora hyacinthus coral colonies located in either patch or fore reefs of the Palau Archipeglo from November 2017 to January 2020.

Dominant microbe taxa from Florida Keys National Marine Sanctuary, 2009-2012 (HERBVRE project)

Deron Burkepile & Rebecca Vega Thurber
This dataset contains microbial orders that rose to dominate at least one sample. Values quantify the number of samples in which each order was the most abundant, as well as average metadata values for the samples in which that order became most abundant. Metadata values calculated are temperature, overall community evenness, the cover of all upright algae, tall turf algae, or cyanobacteria, and the average abundance of the dominant taxon. Published in Nature Communications (2016)...

Temperature, salinity, and chlorophyll data used for analysis of urchin gut microbiota, Echinometra sp. EZ (Spatial Data Series)

Remi Ketchum, Edward G. Smith, Grace O. Vaughan, Dain McParland, Noura Al-Mansoori, John A. Burt & Adam Reitzel
Temperature, chlorophyll, and salinity data used for the analysis of urchin gut microbiota, Echinometra sp. EZ. Sea surface temperature data were obtained from NOAA. Chlorophyll concentrations were obtained from NASA MODIS AQUA. Salinity data were obtained from a numeric ocean model: the 1/12 Global Hybrid Coordinate Ocean Model.

Temperature, salinity, and chlorophyll data used for analysis of urchin gut microbiota, Echinometra sp. EZ (Temporal Data Series)

Remi Ketchum, Edward G. Smith, Grace O. Vaughan, Dain McParland, Noura Al-Mansoori, John A. Burt & Adam Reitzel
Temperature, chlorophyll, and salinity data used for the analysis of urchin gut microbiota, Echinometra sp. EZ. Sea surface temperature data were obtained from NOAA. In addition, a temperature logger (Onset Hobo Tidbit V2) was deployed on the reef substrate at Saadiyat reef which recorded at 60-minute intervals for the temporal series. Chlorophyll concentrations were obtained from NASA MODIS AQUA. Salinity data were obtained from a numeric ocean model: the 1/12 Global Hybrid Coordinate Ocean Model.

Algal cover from herbivore exclusion and nutrient enrichment experiments conducted in the Florida Keys National Marine Sanctuary during 2009-2012

Deron Burkepile & Rebecca Vega Thurber
This dataset contains summary percent cover data for algal species and other encrusting invertebrates found in the study plots in the Florida Keys National Marine Sanctuary during 2009-2012.

Temperature, salinity, fluorescence, and dissolved O2/Ar ratios measured continuously underway onboard basin-wide transects of the North Pacific from Hong Kong to Long Beach, CA

Hilary I. Palevsky & Paul Quay
Temperature, salinity, fluorescence, and dissolved O2/Ar ratios were measured continuously from an underway seawater system on board commercial container ships OOCL Tianjin and OOCL Tokyo. Measurements were made from May 2011 to August 2012 during basin-wide transects of the North Pacific Ocean while traversing from Hong Kong to Long Beach, CA

Dissolved and total dissolvable trace metal concentrations, Fe and Cu-binding organic ligands, and Fe-binding humic-like substances from R/V Weatherbird cruise WB1513 and R/V Hogarth cruise HO-1807 along the West Florida Shelf in 2015 and 2018

Kristen Buck & Travis Mellett
Dissolved and total dissolvable trace metal concentrations, Fe and Cu-binding organic ligands, and Fe-binding humic-like substances from R/V Weatherbird cruise WB1513 and R/V Hogarth cruise HO-1807 conducted along the West Florida Shelf in the eastern Gulf of Mexico in 2015 and 2018. These data have been published in Mellett & Buck, 2020 (doi: 10.1016/j.marchem.2020.103891).

Proportion of infected polyps at Days 31, 52 and 69 in newly settled polyps of Antillogorgia bipinnata inoculated with one of five genotypes of Breviolum antillogorgium and reared at 26 and 30 degrees Celsius.

Mary A. Coffroth & Casey terHorst
Proportion of infected polyps at Days 31, 52 and 69 in newly settled polyps of Antillogorgia bipinnata inoculated with one of five genotypes of Breviolum antillogorgium and reared at 26 and 30 degrees Celsius.

Coral cover, density, and recruits averages per site in St. John, US Virgin Islands from 2007-2016

Peter J. Edmunds
This study was carried out on shallow reefs along the south coast of St. John, which have been monitored since 1987, and studied since the 1950s. Three aspects of the time-series analyses are utilized, and the study period exploited concurrent sampling of coral cover, coral recruitment, and the dynamics of small corals (colonies ≤ 40-mm diameter). These aspects of community structure were studied at 5–6 sites at 5–9-m depth between Cabritte Horn and White Point.

Prokaryote and eukaryote abundance in phytodetrital aggregates (PA), fecal aggregates (FA), and the ambient seawater from samples collected during R/V Atlantic Explorer cruises AE1718 and AE1809 in 2017 and 2018 at BATS in Bermuda

Susanne Neuer
Abundances of prokaryotic classes and eukaryotic orders and species found in phytodetrital aggregates (PA), fecal aggregates (FA), and the ambient seawater in the fall and spring seasons, as well as of species in DNA extraction negative controls. Abundance values are prior to (raw) and following rarefaction. These data were published in Neuer et al. (2021).

Registration Year

  • 2021
    683

Resource Types

  • Dataset
    683

Affiliations

  • Woods Hole Oceanographic Institution
    13
  • New England Aquarium
    1
  • MIT University
    1
  • University of California, San Diego
    1
  • United States Coast Guard Academy
    1
  • University of Florida
    1
  • University of Hawaii System
    1
  • University of California, Los Angeles
    1
  • Naval Undersea Warfare Center
    1
  • National Taiwan University
    1