Supplemental Material for Schoonmaker et al., 2019

Ashley Schoonmaker, Yue Hao, David McK. Bird & Gavin Conant
Figure S1 gives the distribution of Ka values for the three MIG genomesTen core data files are broken down as:1-3: Gene order files:· Meloidogyne_arenaria_POInT_geneorders.txt · Meloidogyne_incognita_POInT_geneorders.txt· Meloidogyne_javanica_POInT_geneorders.txt4: The inferred ancestral gene order: Nematode_WGT_OptOrder.txt5-8: 4 models of gene loss after triplication:· WGT_Null_model.txt· WGT_1Frac_model.txt· WGT_1FracS_model.txt· WGT_1FracS2_model.txt9: The optimized phylogenetic topology, Nematode_WGT_OptTopo.tre and 10: The set of orthology predictions from POInT: ThreeSpp_WGT_1Frac_SingF_DSep_Top2_m2Opt2_postprobs.txt.
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