Efficient Algorithms for Prokaryotic Whole Genome Assembly and Finishing

Abhishek Biswass
De-novo genome assembly from DNA fragments is primarily based on sequence overlap information. In addition, mate-pair reads or paired-end reads provide linking information for joining gaps and bridging repeat regions. Genome assemblers in general assemble long contiguous sequences (contigs) using both overlapping reads and linked reads until the assembly runs into an ambiguous repeat region. These contigs are further bridged into scaffolds using linked read information. However, errors can be made in both phases of...
This data repository is not currently reporting usage information. For information on how your repository can submit usage information, please see our documentation.