This data set contains carbon flux measurements recorded by an aircraft at the Duke, Harvard, and Howland Forest sites during the summers of 2012-2014 as part of the Airborne Microwave Observatory of Subcanopy and Subsurface (AirMOSS) project. Frequent measurements of CO2 and H2O were obtained using a cavity ring down spectrometer on board the Airborne Laboratory for Atmospheric Research, operated by Purdue University. Estimates of surface CO2 flux, sensible and latent heat fluxes, their corresponding...