Multiple sequence alignment for the native Norwegian vascular plant phylogeny

Ida M. Mienna, James D.M. Speed, Mika Bendiksby, Andrew H. Thornhill, Brent D. Mishler & Michael D. Martin
Methods: We produced a multi-locus Maximum Likelihood (ML) phylogeny using a combination of newly produced DNA sequences from herbarium specimens and sequences available from public repositories. We combined the phylogeny with species occurrence data to estimate phylogenetic diversity and phylogenetic endemism across Norway, using a spatial randomization to judge statistical significance. We used multiple-model inference to identify environmental variables that contributed the most to the patterns of phylogenetic diversity. Finally, we estimated phylogenetic turnover and...
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