Data from: Genome-wide SNP data revealed the extent of linkage disequilibrium, persistence of phase and effective population size in purebred and crossbred buffalo populations

Tingxian Deng, Aixin Liang, Jiajia Liu, Guohua Hua, Tingzhu Ye, Shenhe Liu, Giuseppe Campanile, Graham Plastow, Chunyan Zhang, Zhiquan Wang, Angela Salzano, Bianca Gasparrini, Martina Cassandro, Hasan Riaz, Xianwei Liang, Liguo Yang & Martino Cassandro
Linkage disequilibrium (LD) is a useful parameter for guiding the accuracy and power of both genome-wide association studies (GWAS) and genomic selection (GS) among different livestock species. The present study evaluated the extent of LD, persistence of phase and effective population size (Ne) for the purebred (Mediterranean buffalo; n=411) and crossbred [Mediterranean × Jianghan × Nili-Ravi buffalo, n=9; Murrah × Nili-Ravi × local (Xilin or Fuzhong) buffalo, n=36] buffalo populations using the 90K Buffalo SNP...
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