Data from: HyDe: a Python package for genome-scale hybridization detection

Paul D. Blischak, Julia Chifman, Andrea D. Wolfe & Laura S. Kubatko
The analysis of hybridization and gene flow among closely related taxa is a common goal for researchers studying speciation and phylogeography. Many methods for hybridization detection use simple site pattern frequencies from observed genomic data and compare them to null models that predict an absence of gene flow. The theory underlying the detection of hybridization using these site pattern probabilities exploits the relationship between the coalescent process for gene trees within population trees and the...
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