Phylogenomic analyses in Phrymaceae reveal extensive gene tree discordance in relationships among major clades

Diego F. Morales-Briones, Nan Lin, Eileen Huang, Dena Grossenbacher, James Sobel, Caroline Gilmore, David Tank & Ya Yang
• Premise of the study: Phylogenomic datasets using genomes and transcriptomes provide rich opportunities beyond resolving bifurcating phylogenetic relationships. Monkeyflower (Phrymaceae) is a model system for evolutionary ecology. However, it lacks a well-supported phylogeny for a stable taxonomy and for macroevolutionary comparisons. • Methods: We sampled 24 genomes and transcriptomes in Phrymaceae and closely related families, including eight newly sequenced transcriptomes. We reconstructed the phylogeny using IQ-TREE and ASTRAL, evaluated gene tree discordance using PhyParts,...
1 citation reported since publication in 2022.
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