Data from: Is HIV short-sighted? Insights from a multistrain nested model

Katrina Abigail Lythgoe, Lorenzo Pellis & Christophe Fraser
An important component of pathogen evolution at the population level is evolution within hosts. Unless evolution within hosts is very slow compared to the duration of infection, the composition of pathogen genotypes within a host is likely to change during the course of an infection, thus altering the composition of genotypes available for transmission as infection progresses. We develop a nested modeling approach that allows us to follow the evolution of pathogens at the epidemiological...
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