Data from: Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity

Jordan G. Kueneman, Douglas C. Woodhams, Reid Harris, Holly M. Archer, Rob Knight & Valerie J. McKenzie
Host-associated microbiomes perform many beneficial functions including resisting pathogens and training the immune system. Here, we show that amphibians developing in captivity lose substantial skin bacterial diversity, primarily due to reduced ongoing input from environmental sources. We combined studies of wild and captive amphibians with a database of over 1 000 strains that allows us to examine antifungal function of the skin microbiome. We tracked skin bacterial communities of 62 endangered boreal toads, Anaxyrus boreas,...
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