Data from: Exploring the phylogeography of a hexaploid freshwater fish by RAD sequencing

Cora Sabriel Stobie, Carel J. Oosthuizen, Michael J. Cunningham & Paulette Bloomer
The KwaZulu-Natal yellowfish (Labeobarbus natalensis) is an abundant cyprinid, endemic to KwaZulu-Natal Province, South Africa. In this study we developed a Single Nucleotide Polymorphism (SNP) dataset from double-digest Restriction-site Associated DNA (ddRAD) sequencing of samples across the distribution. We addressed several hidden challenges, primarily focussing on proper filtering of RAD data and selecting optimal parameters for data processing in polyploid lineages. We used the resulting high-quality SNP dataset to investigate the population genetic structure of...
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