Data from: Transposable element annotation in non-model species - on the benefits of species specific repeat libraries using semi-automated EDTA and DeepTE de novo pipelines

Ellen Bell, Christopher Butler & Martin Taylor
Transposable elements (TEs) are significant genomic components which can be detected either through sequence homology against existing databases or de novo, with the latter potentially reducing underestimates of TE abundance. Here, we describe the semi-automated generation of a de-novo TE library which combines the newly described EDTA pipeline and DeepTE classifier in a non-model teleost (Corydoras sp. C115). We assess performance using both genomic and transcriptomic input by five metrics: (i) abundance (ii) composition (iii)...
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