Data from: Rumbling orchids: how to assess divergent evolution between chloroplast endosymbionts and the nuclear host

Oscar Alejandro Pérez-Escobar, Juan Antonio Balbuena & Marc Gottschling
Phylogenetic relationships inferred from multilocus organellar and nuclear DNA data are often difficult to resolve because of evolutionary conflicts among gene trees. However, conflicting or “outlier” associations (i.e., linked pairs of “operational terminal units” in two phylogenies) among these data sets often provide valuable information on evolutionary processes such as chloroplast capture following hybridization, incomplete lineage sorting, and horizontal gene transfer. Statistical tools that to date have been used in cophylogenetic studies only also have...
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