Data from: A reference set of curated biomedical data and metadata from clinical case reports

J. Harry Caufield, Yijiang Zhou, Anders O. Garlid, Shaun P. Setty, David A. Liem, Quan Cao, Jessica M. Lee, Sanjana Murali, Sarah Spendlove, Wei Wang, Li Zhang, Yizhou Sun, Alex Bui, Henning Hermjakob, Karol E. Watson & Peipei Ping
Clinical case reports (CCRs) provide an important means of sharing clinical experiences about atypical disease phenotypes and new therapies. However, published case reports contain largely unstructured and heterogeneous clinical data, posing a challenge to mining relevant information. Current indexing approaches generally concern document-level features and have not been specifically designed for CCRs. To address this disparity, we developed a standardized metadata template and identified text corresponding to medical concepts within 3,100 curated CCRs spanning 15...
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