Data from: A new resource for the development of SSR markers: millions of loci from a thousand plant transcriptomes

Richard G. Hodel, Matthew A. Gitzendanner, Charlotte C. Germain-Aubrey, Xiaoxian Liu, Andrew A. Crowl, Miao Sun, Jacob B. Landis, Maria Claudia Segovia-Salcedo, Norman A. Douglas, Shichao Chen, Douglas E. Soltis, Pamela S. Soltis & Richard G. J. Hodel
Premise of the study: The One Thousand Plant Transcriptomes Project (1KP, 1000+ assembled plant transcriptomes) provides an enormous resource for developing microsatellite loci across the plant tree of life. We developed loci from these transcriptomes and tested their utility. Methods and Results: Using software packages and custom scripts, we identified microsatellite loci in 1KP transcriptomes. We assessed the potential for cross-amplification and whether loci were biased toward exons, as compared to markers derived from genomic...
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