Chronogram or phylogram for ancestral state estimation? Model-fit statistics indicate the branch lengths underlying a binary character’s evolution: R scripts and simulated trees

Jeremy Wilson, Nicolás Mongiardino Koch & Martín Ramírez
All R scripts used in this study, and the set of simulated phylogenetic trees used in the study. 1. Modern methods of ancestral state estimation (ASE) incorporate branch length information, and it has been demonstrated that ASEs are more accurate when conducted on the branch lengths most correlated with a character’s evolution; however, a reliable method for choosing between alternate branch length sets for discrete characters has not yet been proposed.2. In this study, we...
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