OKI2018_I69 assembly and annotation of the genome of an individual Oikopleura dioica from Okinawa

Aleksandra Bliznina
A chromosome-scale assembly of the Oikopleura dioica genome from Okinawa, Japan. The contig assembly was generated with long-read Nanopore data using Canu pipeline v1.8, and polished with short Illumina MiSeq reads using Pilon v1.22. Both Nanopore and Illumina data were generated from DNA of a single O. dioica male. Hi-C chromosomal conformation capture data was used to order and orient the contigs into scaffolds using Juicer v1.6 and 3D de novo assembly (3D-DNA) pipelines. The...
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