meganshand/gatk: LinST related tools

Louis Bergelson, Adam Kiezun, David Benjamin, , Chris Norman, Lee Lichtenstein, , Tom White, , Valentin Ruano Rubio, , Steve Huang, Jonn Smith, Daniel Gómez-Sánchez, , Takuto Sato, , , , Ron Levine, Mark Walker, , , , … & Matt Sooknah
This release contains the changes made to the GATK for the LinST somatic truth set.
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