Supplemental data to \"Estimating the Genetic Diversity of Pacific salmon and trout using Multi-gene eDNA Metabarcoding\"Kevin Weitemier, Brooke E. Penaluna, Laura Hauck, Lucas J. Longway, Tiffany Garcia & Richard Cronn
This dataset contains DNA sequence data of Oncorhynchus species, isolated from environmental DNA (eDNA) from Pacific Northwest streams via microfluidic eDNA metabarcoding and high-throughput (Ilummina) sequencing (samples collected from 2017-09-22 to 2017-10-10). It is accompanied by scripts and commands for data analyses including: sequence denoising, calculation of entropy values by codon position, and calculation of diversity statistics and haplotype mapping. Intermediate outputs include denoised haplotypes, entropy calculations, and haplotype summaries following chimera removal.
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