Data from: Using parsimony-guided tree proposals to accelerate convergence in Bayesian phylogenetic inferenceChi Zhang, John Huelsenbeck & Fredrik Ronquist
Sampling across tree space is one of the major challenges in Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC) algorithms. Standard MCMC tree moves consider small random perturbations of the topology, and select from candidate trees at random or based on the distance between the old and new topologies. MCMC algorithms using such moves tend to get trapped in tree space, making them slow in finding the globally most probable trees (known as `convergence')...
The Sinacanthida ordo nov. and Mongolepidida are spine- and scale-based taxa whose remains encompass some of the earliest reported fossils of chondrichthyan fish. Investigation of fragmentary material from the Early Silurian Tataertag and Ymogantau Formations of the Tarim Basin (Xinjiang Uygur Autonomous Region, China) has revealed a diverse mongolepidid and sinacanthid fauna dominated by mongolepids and sinacanthids in association with abundant dermoskeletal elements of the endemic ‘armoured’ agnathans known as galeaspids. Micro-computed tomography, scanning electron...
Data from: Morphological datasets fit a common mechanism much more poorly than DNA sequences and call into question the Mkv modelPablo A. Goloboff, Michael Pittman, Diego Pol, Xing Xu & Pablo A Goloboff
The Mkv evolutionary model, based on minor modifications to models of molecular evolution, is being increasingly used to infer phylogenies from discrete morphological data, often producing different results from parsimony. The critical difference between Mkv and parsimony is the assumption of a “common mechanism” in the Mkv model, with branch lengths determining that probability of change for all characters increases or decreases at the same tree branches by the same exponential factor. We evaluate whether...
Data from: The Victoria West: earliest prepared core technology in the Acheulean at Canteen Kopje and implications for the cognitive evolution of early hominidsHao Li, Kathleen Kuman, Matt G. Lotter, George M. Leader & Ryan J. Gibbon
Prepared core technology illustrates in-depth planning and the presence of a mental template during the core reduction process. This technology is, therefore, a significant indicator in studying the evolution of abstract thought and the cognitive abilities of hominids. Here, we report on Victoria West cores excavated from the Canteen Kopje site in central South Africa, with a preliminary age estimate of approximately 1 Ma (million years ago) for these cores. Technological analysis shows that the...
The colossal size and body plan of sauropod dinosaurs are unparalleled in terrestrial vertebrates. However, to date, there have been only limited attempts to examine temporal and phylogenetic patterns in the sauropod bauplan. Here, we combine three-dimensional computational models with phylogenetic reconstructions to quantify the evolution of whole-body shape and body segment properties across the sauropod radiation. Limitations associated with the absence of soft tissue preservation in fossils result in large error bars about mean...
Data from: The tetrapod fauna of the upper Permian Naobaogou Formation of China: a new species of Elginia (Parareptilia, Pareiasauria)Jun Liu & Gabriel S. Bever
The pareiasaur fossil record in China is poor compared to that of Russia or South Africa. A new pareiasaur specimen is here reported from the upper Permian Naobaogou Formation of the Daqing Mountains, Nei Mongol, China. It is recognized as a new species of Elginia, a taxon otherwise known only from the upper Permian Cutties Hillock Sandstone of Scotland. Diagnostic features include a moderately developed cheek flange; prominent otic notch (formed between squamosal and quadratojugal...
Data from: Eocene Pachynolophinae (Perissodactyla, Palaeotheriidae) from China and their paleobiogeographic implicationsBin Bai
The Eocene Palaeotheriidae was traditionally considered a nearly endemic European group within Equoidea, but a few palaeotheres have been reported from Asia. Here I reanalyze a maxilla containing M1-3 from the Lunan Basin, Yunnan Province, China. This element was initially assigned to a new tapiromorph species, Lophialetes yunnanensis, but I erect a new genus Lophiohippus within Pachynolophinae for the Yunnan specimen based mainly on the absence of mesostyles, the strongly inclined metalophs, the strong development...
Data from: A new moth-preying alpine pitviper species from Qinghai-Tibetan plateau (Viperidae, Crotalinae)Jingsong Shi, Gang Wang, Xi'er Chen, Li Ding, Song Huang, Mian Hou, Jun Liu, Pipeng Li, Xi’er Chen & Yihao Fang
The Sanjiangyuan region of Qinghai-Tibetan Plateau is recognized as a biodiversity hotspot of alpine mammals but a barren area in terms of amphibians and reptiles. Here, we describe a new pit viper species, Gloydius rubromaculatus sp. n. Shi, Li and Liu, 2017 that was discovered in this region, with a brief taxonomic revision of the genus Gloydius. The new species can be distinguished from the other congeneric species by the following characteristics: cardinal crossbands on...
Data from: Reinterpretation of a previously described Jehol bird clarifies early trophic evolution in the OrnithuromorphaXiaoting Zheng, Jingmai K. O'Connor, Xiaoli Wang, Yan Wang & Zhonghe Zhou
STM35-3 from the Yixian Formation is the only Early Cretaceous ornithuromorph preserving direct evidence of granivory. The crop contains numerous seeds and the preservation of gastroliths presumably within the ventriculus indicates this diet was paired with the presence of a gastric mill as in living granivorous birds. STM35-3 was originally referred to Hongshanornis longicresta, member of a diverse clade of small, basal ornithuromorphs with elongate hindlimbs known as the Hongshanornithidae. Hindlimb proportions suggest that hongshanornithids...
Data from: Rates of dinosaur body mass evolution indicate 170 million years of sustained ecological innovation on the avian stem lineageRoger B. J. Benson, Nicolás E. Campione, Matthew T. Carrano, Philip D. Mannion, Corwin Sullivan, Paul Upchurch & David C. Evans
Large-scale adaptive radiations might explain the runaway success of a minority of extant vertebrate clades. This hypothesis predicts, among other things, rapid rates of morphological evolution during the early history of major groups, as lineages invade disparate ecological niches. However, few studies of adaptive radiation have included deep time data, so the links between extant diversity and major extinct radiations are unclear. The intensively studied Mesozoic dinosaur record provides a model system for such investigation,...
In order to determine the incubation temperature of eggs laid by non-avian dinosaurs, we analysed the oxygen isotope compositions of both eggshell carbonate (δ18Oc) and embryo bone phosphate (δ18Op) from seven oviraptorosaur eggs with preserved in ovo embryo bones. These eggs come from the Upper Cretaceous Nanxiong Formation of Jiangxi Province, China. Oviraptorosaur theropods were selected because of their known brooding behaviour as evidenced by preserved adult specimens fossilized in brooding posture on their clutch....
Data from: Locomotory abilities and habitat of the Cretaceous bird Gansus yumenensis inferred from limb length proportionsRobert L. Nudds, Jessie Atterholt, Xia Wang, H. L. You, Gareth J. Dyke, J. Atterholt, R. L. Nudds, X. Wang & H.-L. You
The relative length proportions of the three bony elements of the pelvic (femur, tibiotarsus and tarsometatarsus) and pectoral (humerus, ulna and manus) limbs of the early Cretaceous bird Gansus yumenensis, a well-represented basal ornithuromorph from China are investigated and compared to those of extant taxa. Ternary plots show that the pectoral limb length proportions of Gansus are most similar to Apodiformes (swifts and hummingbirds), which plot away from all other extant birds. In contrast, the...
The Early Cretaceous is a critical interval in the early history of birds. Exceptional fossils indicate that important evolutionary novelties such as a pygostyle and a keeled sternum had already arisen in Early Cretaceous taxa, bridging much of the morphological gap between Archaeopteryx and crown birds. However, detailed features of basal bird evolution remain obscure because of both the small sample of fossil taxa previously considered and a lack of quantitative studies assessing rates of...
Data from: Redescription of Phymolepis cuifengshanensis (Antiarcha: Yunnanolepididae) using high-resolution computed tomography and new insights into anatomical details of the endocranium in antiarchsYajing Wang & Min Zhu
Background. Yunnanolepidoids constitute either the basal-most consecutive segments or the most primitive clade of antiarchs, a highly diversified jawed vertebrate group from the Silurian and Early Devonian periods. Although the general morphology of yunnanolepidoids is well established, their endocranial features remain largely unclear, thus hindering our further understanding of antiarch evolution, and early gnathostome evolution. Phymolepis cuifengshanensis, a yunnanolepidoid from the Early Devonian of southwestern China, is re-described in detail to reveal the information on...
Institute of Vertebrate Paleontology and Paleoanthropology14
Chinese Academy of Sciences5
University of Chinese Academy of Sciences4
University of Pennsylvania2
University of Manchester2
Institute of Geology2
Capital Normal University1
University of Pretoria1
Royal Ontario Museum1
Natural History Museum1
University of California, Berkeley1
University of Edinburgh1
University of Lyon System1