12 Works

Data from: Stick insect genomes reveal natural selection's role in parallel speciation

Victor Soria-Carrasco, Zachariah Gompert, Aaron A. Comeault, Timothy E. Farkas, Thomas L. Parchman, J. Spencer Johnston, C. Alex Buerkle, Jeffrey L. Feder, Jens Bast, Tanja Schwander, Scott P. Egan, Bernard J. Crespi & Patrik Nosil
Natural selection can drive the repeated evolution of reproductive isolation, but the genomic basis of parallel speciation remains poorly understood. We analyzed whole-genome divergence between replicate pairs of stick insect populations that are adapted to different host plants and undergoing parallel speciation. We found thousands of modest-sized genomic regions of accentuated divergence between populations, most of which are unique to individual population pairs. We also detected parallel genomic divergence across population pairs involving an excess...

Data from: Genotyping-by-sequencing for Populus population genomics: an assessment of genome sampling patterns and filtering approaches

Martin P. Schilling, Paul G. Wolf, Aaron M. Duffy, Hardeep S. Rai, Carol A. Rowe, Bryce A. Richardson & Karen E. Mock
Continuing advances in nucleotide sequencing technology are inspiring a suite of genomic approaches in studies of natural populations. Researchers are faced with data management and analytical scales that are increasing by orders of magnitude. With such dramatic advances comes a need to understand biases and error rates, which can be propagated and magnified in large-scale data acquisition and processing. Here we assess genomic sampling biases and the effects of various population-level data filtering strategies in...

Data from: Limited alpine climatic warming and modeled phenology advancement for three alpine species in the Northeast United States

Kenneth D. Kimball, Michael L. Davis, Douglas M. Weihrauch, Georgia L. D. Murray & Kenneth Rancourt
Premise of the study: Most alpine plants in the Northeast United States are perennial and flower early in the growing season, extending their limited growing season. Concurrently, they risk the loss of reproductive efforts to late frosts. Quantifying long-term trends in northeastern alpine flower phenology and late-spring/early-summer frost risk is limited by a dearth of phenology and climate data, except for Mount Washington, New Hampshire (1916 m a.s.l.). Methods: Logistic phenology models for three northeastern...

Data from: Developmental and evolutionary history affect survival in stressful environments

Gareth R. Hopkins, , Susannah S. French & Edmund D. Brodie
The world is increasingly impacted by a variety of stressors that have the potential to differentially influence life history stages of organisms. Organisms have evolved to cope with some stressors, while with others they have little capacity. It is thus important to understand the effects of both developmental and evolutionary history on survival in stressful environments. We present evidence of the effects of both developmental and evolutionary history on survival of a freshwater vertebrate, the...

Data from: Influence of group size on the success of wolves hunting bison

Daniel R. MacNulty, Aimee Tallian, Daniel R. Stahler & Douglas W. Smith
An intriguing aspect of social foraging behaviour is that large groups are often no better at capturing prey than are small groups, a pattern that has been attributed to diminished cooperation (i.e., free riding) in large groups. Although this suggests the formation of large groups is unrelated to prey capture, little is known about cooperation in large groups that hunt hard-to-catch prey. Here, we used direct observations of Yellowstone wolves (Canis lupus) hunting their most...

Data from: Admixture and the organization of genetic diversity in a butterfly species complex revealed through common and rare genetic variants

Zachariah Gompert, Lauren K. Lucas, C. Alex Buerkle, Matthew L. Forister, James A. Fordyce & Chris C. Nice
Detailed information about the geographic distribution of genetic and genomic variation is necessary to better understand the organization and structure of biological diversity. In particular, spatial isolation within species and hybridization between them can blur species boundaries and create evolutionary relationships that are inconsistent with a strictly bifurcating tree model. Here we analyze genome-wide DNA sequence and genetic ancestry variation in Lycaeides butterflies to quantify the effects of admixture and spatial isolation on how biological...

Data from: Shrubs as ecosystem engineers across an environmental gradient: effects on species richness and exotic plant invasion

Andrew R. Kleinhesselink, Susan M. Magnoli & J. Hall Cushman
Ecosystem-engineering plants modify the physical environment and can increase species diversity and exotic species invasion. At the individual level, the effects of ecosystem engineers on other plants often become more positive in stressful environments. In this study, we investigated whether the community-level effects of ecosystem engineers also become stronger in more stressful environments. Using comparative and experimental approaches, we assessed the ability of a native shrub (Ericameria ericoides) to act as an ecosystem engineer across...

Data from: Bumble bee nest abundance, foraging distance, and host-plant reproduction: implications for management and conservation

Jennifer C. Geib, James P. Strange & Candace Galen
Recent reports of global declines in pollinator species imply an urgent need to assess the abundance of native pollinators and density-dependent benefits for linked plants. In this study, we investigated (1) pollinator nest distributions and estimated colony abundances, (2) the relationship between abundances of foraging workers and the number of nests they represent, (3) pollinator foraging ranges, and (4) the relationship between pollinator abundance and plant reproduction. We examined these questions in an alpine ecosystem...

Data from: Density-dependent intraspecific aggression regulates survival in northern Yellowstone wolves (Canis lupus)

Sarah Cubaynes, Daniel R. Mac Nulty, Daniel R. Stahler, Kira A. Quimby, Douglas W. Smith, Tim Coulson & Daniel R. MacNulty
1. Understanding the population dynamics of top predators is essential to assess their impact on ecosystems and to guide their management. Key to this understanding is identifying the mechanisms regulating vital rates. 2. Determining the influence of density on survival is necessary to understand the extent to which human-caused mortality is compensatory or additive. In wolves (Canis lupus), empirical evidence for density-dependent survival is lacking. Dispersal is considered the principal way in which wolves adjust...

Data from: Swimming against the tide: resilience of a riverine turtle to recurrent extreme environmental events

Abigail M. Jergenson, David A. W. Miller, Lorin A. Neuman-Lee, Daniel A. Warner & Fredric J. Janzen
Extreme environmental events (EEE) are likely to exert deleterious effects on populations. From 1996-2012 we studied the nesting dynamics of a riverine population of painted turtles (Chrysemys picta) that experienced seven years with significantly definable spring floods. We used capture-mark-recapture methods to estimate the relationships between >5-m and >6-m flood events and population parameters. Contrary to expectations, flooding was not associated with annual differences in survival, recruitment, or annual population growth rates of the adult...

Data from: Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores

Robert C. Lonsinger, Eric M. Gese, Steven J. Dempsey, Bryan M. Kluever, Lisette P. Waits & Timothy R. Johnson
Noninvasive genetic sampling, or noninvasive DNA sampling (NDS), can be an effective monitoring approach for elusive, wide-ranging species at low densities. However, few studies have attempted to maximize sampling efficiency. We present a model for combining sample accumulation and DNA degradation to identify the most efficient (i.e. minimal cost per successful sample) NDS temporal design for capture–recapture analyses. We use scat accumulation and faecal DNA degradation rates for two sympatric carnivores, kit fox (Vulpes macrotis)...

Data from: Unexpected ancestry of Populus seedlings from a hybrid zone implies a large role for postzygotic selection in the maintenance of species

Dorothea Lindtke, Zachariah Gompert, Christian Lexer & C. Alex Buerkle
In the context of potential interspecific gene flow, the integrity of species will be maintained by reproductive barriers that reduce genetic exchange, including traits associated with prezygotic isolation or poor performance of hybrids. Hybrid zones can be used to study the importance of different reproductive barriers, particularly when both parental species and hybrids occur in close spatial proximity. We investigated the importance of barriers to gene flow that act early versus late in the life...

Registration Year

  • 2014

Resource Types

  • Dataset


  • Utah State University
  • University of Wyoming
  • University of Nevada Reno
  • National Park Service
  • Appalachian Mountain Club
  • University of Alabama at Birmingham
  • Rice University
  • Mount Washington Observatory
  • University of Lausanne
  • Texas A&M University