90 Works

Archives and Special Collections Linked Data: Navigating between Notes and Nodes

Erin Blake, Itza A. Carbajal, Regine Heberlein, Sarah Horowitz, Jason Kovari, VANESSA LACEY, Cory Lampert, Holly Mengel, Cory Nimer, Maria Oldal, Merrilee Proffitt, Nathan Putnam, Arielle Rambo, Elizabeth Roke, Eric de Ruijter, Dan Santamaria, Karen Smith-Yoshimura, Weatherly Stephan, Bruce Washburn & Chela Weber

Wolbachia affect behavior and possibly reproductive compatibility but not thermoresistance, fecundity, and morphology in a novel transinfected host, Drosophila nigrosparsa

Matsapume Detcharoen, Wolfgang Arthofer, Francis Jiggins, Florian Steiner & Birgit Schlick-Steiner
Wolbachia, intracellular endosymbionts, are estimated to infect about half of all arthropod species. These bacteria manipulate their hosts in various ways for their maximum benefits. The rising global temperature may accelerate species migration and, thus, horizontal transfer of Wolbachia may occur across species previously not in contact. We transinfected and then cured the alpine fly Drosophila nigrosparsa with Wolbachia strain wMel to study its effects on this species. We found low Wolbachia titer, possibly cytoplasmic...

Data from: Differential divergence in autosomes and sex chromosomes is associated with intra-island diversification at a very small spatial scale in a songbird lineage

Yann Bourgeois, Joris Bertrand, Boris Delahaie, Helene Holota, Christophe Thebaud & Borja Mila
Recently diverged taxa showing marked phenotypic and ecological diversity are optimal systems to understand the genetic processes underlying speciation. We used genome-wide markers to investigate the diversification of the Reunion grey white eye (Zosterops borbonicus) on the small volcanic island of Reunion (Mascarene archipelago), where this species complex exhibits four geographic forms that are parapatrically distributed across the island and differ strikingly in plumage colour. One form restricted to the highlands is separated by a...

Signals interpreted as archaic introgression are driven primarily by accelerated evolution in Africa

William Amos
Non-African humans appear to carry a few percent archaic DNA due to ancient inter-breeding. This modest legacy and its likely recent timing imply that most introgressed fragments will be rare and hence will occur mainly in the heterozygous state. I tested this prediction by calculating D statistics, a measure of legacy size, for pairs of humans where one of the pair was conditioned always to be either homozygous or heterozygous. Using coalescent simulations, I confirmed...

Data from: Multimodal mimicry of hosts in a radiation of parasitic finches

Gabriel Jamie, Steven M. Van Belleghem, Benedict G. Hogan, Silky Hamama, Collins Moya, Jolyon Troscianko, Mary Stoddard, Rebecca Kilner & Claire Spottiswoode
Brood parasites use the parental care of others to raise their young and sometimes employ mimicry to dupe their hosts. The brood-parasitic finches of the genus Vidua are a textbook example of the role of imprinting in sympatric speciation. Sympatric speciation is thought to occur in Vidua because their mating traits and host preferences are strongly influenced by their early host environment. However, this alone may not be sufficient to isolate parasite lineages, and divergent...

Can behaviour impede evolution? persistence of singing effort after morphological song loss in crickets

Jack Rayner, Will Schneider & Nathan Bailey
Evolutionary loss of sexual signals is widespread. Examining the consequences for behaviours associated with such signals can provide insight into factors promoting or inhibiting trait loss. We tested whether a behavioural component of a sexual trait, male calling effort, has been evolutionary reduced in silent populations of Hawaiian field crickets (Teleogryllus oceanicus). Cricket song requires energetically costly wing movements, but ‘flatwing’ males have feminised wings that preclude song and protect against a lethal, eavesdropping parasitoid....

Teaching and learning in ecology: a horizon scan of emerging challenges and solutions

Zenobia Lewis, Julia Cooke, Yoseph Araya, Karen Bacon, Joanna Bagniewska, Lesley Batty, Tom Bishop, Moya Burns, Magda Charalambous, David Daversa, Liam Dougherty, Miranda Dyson, Adam Fisher, Dan Forman, Cristina Garcia, Ewan Harney, Thomas Hesselberg, Elizabeth John, Robert Knell, Kadmiel Maseyk, Alice Mauchline, Julie Peacock, Angelo Pernetto, Jeremy Pritchard, William Sutherland … & Nicholas Worsfold
We currently face significant, anthropogenic, global environmental challenges and therole of ecologists in mitigating these challenges is arguably more important than ever. Consequently there is an urgent need to recruit and train future generations of ecologists, both those whose main area is ecology, but also those involved in the geological, biological and environmental sciences. Here we present the results of a horizon scanning exercise that identified current and future challenges facing the teaching of ecology,...

Disentangling sources of gene tree discordance in phylogenomic datasets: testing ancient hybridizations in Amaranthaceae s.l.

Diego F. Morales-Briones, Gudrun Kadereit, Delphine Tefarikis, Michael Moore, Stephen Smith, Samuel Brockington, Alfonso Timoneda, Won Yim, John Cushman & Ya Yang
Gene tree discordance in large genomic datasets can be caused by evolutionary processes such as incomplete lineage sorting and hybridization, as well as model violation, and errors in data processing, orthology inference, and gene tree estimation. Species tree methods that identify and accommodate all sources of conflict are not available, but a combination of multiple approaches can help tease apart alternative sources of conflict. Here, using a phylotranscriptomic analysis in combination with reference genomes, we...

How butterflies keep their cool: physical and ecological traits influence thermoregulatory ability and population trends.

Andrew Bladon, Matthew Lewis, Eleanor Bladon, Sam Buckton, Stuart Corbett, Steven Ewing, Matthew Hayes, Gwen Hitchcock, Richard Knock, Colin Lucas, Adam McVeigh, Rosa Menendez, Jonah Walker, Tom Fayle & Edgar Turner
Understanding which factors influence the ability of individuals to respond to changing temperatures is fundamental to species conservation under climate change. We investigated how a community of butterflies responded to fine-scale changes in air temperature, and whether species-specific responses were predicted by ecological or morphological traits. Using data collected across a UK reserve network, we investigated the ability of 29 butterfly species to buffer thoracic temperature against changes in air temperature. First, we tested whether...

Data from: Group size elevates inequality in cooperative behaviour

Shay Rotics & Tim Clutton-Brock
In cooperatively breeding species where rearing effort is shared among multiple group members, increases in group size typically reduce average per capita contributions to offspring care in all group members (load-lightening) but it is not known how changes in group size affect the distribution of workload among group members. The socioeconomic collective action theory suggests that, in larger groups, the incentives for free riding are stronger, leading to greater inequalities in work-division among group members....

Temperature-mediated plasticity in incubation schedules is unlikely to evolve to buffer embryos from climatic challenges in a seasonal songbird

Alexandra Cones, Andrea Liebl, Thomas Houslay & Andrew Russell
Phenotypic plasticity is hypothesised to facilitate adaptive responses to challenging conditions, such as those resulting from climate change. However, the key predictions of this ‘rescue hypothesis’, that variation in plasticity exists and can evolve to buffer unfavourable conditions, remain rare. Here, we investigate among-female variation in temperature-mediated plasticity of incubation schedules and consequences for egg temperatures using the chestnut-crowned babbler (Pomatostomus ruficeps) from temperate regions of inland south-eastern Australia. Given phenological advances in this seasonal...

The Geometry and Genetics of Hybridization

Hilde Schneemann, Bianca De Sanctis, Denis Roze, Nicolas Bierne & John Welch
When divergent populations form hybrids, hybrid fitness can vary with genome composition, current environmental conditions, and the divergence history of the populations. We develop analytical predictions for hybrid fitness, which incorporate all three factors. The predictions are based on Fisher's geometric model, and apply to a wide range of population genetic parameter regimes and divergence conditions, including allopatry and parapatry, local adaptation and drift. Results show that hybrid fitness can be decomposed into intrinsic effects...

Small scale variability in soil moisture drives infection of vulnerable juniper populations by invasive forest pathogen

Flora Donald, Sarah Green, Kate Searle, Nik J. Cunniffe & Bethan V. Purse
The oomycete plant pathogen, Phytophthora austrocedri, is an aggressive killer of cypress trees causing severe mortality of Chilean cedar (Austrocedrus chilensis) in Argentina since the 1940s and now common juniper (Juniperus communis s.l.) in the UK. Rapid mortality of key UK juniper populations was first observed in the early 2000s; the causal agent of mortality was confirmed as P. austrocedri in 2012 and the pathogen has now been widely detected - but is not ubiquitous...

Clustering of loci controlling species differences in male chemical bouquets of sympatric Heliconius butterflies

Kelsey Byers, Kathy Darragh, Sylvia Fernanda Garza, Diana Abondano Almeida, Ian Warren, Pasi Rastas, Richard Merrill, Stefan Schulz, W. Owen McMillan & Chris Jiggins
The degree to which loci promoting reproductive isolation cluster in the genome – i.e. the genetic architecture of reproductive isolation - can influence the tempo and mode of speciation. Tight linkage between these loci can facilitate speciation in the face of gene flow. Pheromones play a role in reproductive isolation in many Lepidoptera species, and the role of endogenously-produced compounds as secondary metabolites decreases the likelihood of pleiotropy associated with many barrier loci. Heliconius butterflies...

Derived global responses of annual river flow to catchment forestation through time, between 1900 and 2018

L. Bentley & D.A. Coomes
This dataset reports the responses of annual river flow to forestation in 43 catchments and contains 770 data points. Data shows the change in river flow following forestation at annual time scales, along control river flow measurements and associated metadata from primary and secondary sources. Data collection, processing and interpretation were performed by Laura Bentley and David A. Coomes between January 2018 and October 2019. Forestation was defined as a change in land cover from...

Hybridization and transgressive exploration of colour pattern and wing morphology in Heliconius butterflies

Claire Mérot, Vincent Debat, Yann Le Poul, Richard M Merrill, Russell E Naisbit, Adélie Tholance, Chris Jiggins & Mathieu Joron
Hybridization can generate novel phenotypes distinct from those of parental lineages, a phenomenon known as transgressive trait variation. Transgressive phenotypes might negatively or positively affect hybrid fitness, and increase available variation. Closely related species of Heliconius butterflies regularly produce hybrids in nature and hybridization is thought to play a role in the diversification of novel wing colour patterns despite strong stabilizing selection due to interspecific mimicry. Here, we studied wing phenotypes in first and second...

Signalling adjustments to direct and indirect environmental effects on signal perception in meerkats

Gabriella Gall, Pauline Toni, Tim Clutton-Brock & Marta Manser
The efficiency of communication between animals is determined by the perception range of signals. With changes in the environment, signal transmission between a sender and a receiver can be affected both directly, where the signal’s propagation quality itself is affected, and indirectly, where for example the spacing between signaller and receiver is impacted. Here we investigated how meerkats (Suricata suricatta) in the Kalahari Desert adjust to these challenges in the context of maintaining group cohesion...

Genome reduction is associated with bacterial pathogenicity across different scales of temporal and ecological divergence - between species core gene alignments

Jane Charlesworth, Gemma Murray, Eric Miller, Michael Casey, Catrin Lloyd, Marcello Gottschalk, Dan Tucker, John Welch & Lucy Weinert
Emerging bacterial pathogens threaten global health and food security, and so it is important to ask whether these transitions to pathogenicity have any common features. We present a systematic study of the claim that pathogenicity is associated with genome reduction and gene loss. We compare broad-scale patterns across all bacteria, with detailed analyses of Streptococcus suis, an emerging zoonotic pathogen of pigs, which has undergone multiple transitions between disease and carriage forms. We find that...

Benefits of cooperation in captive Damaraland mole rats

Thomas Houslay, Philippe Vullioud, Markus Zöttl & Tim Clutton-Brock
Although the social mole rats are commonly classified as eusocial breeders on the grounds that groups include a single breeding female (the ‘queen’) and a number of non-breeding individuals (‘helpers’) of both sexes, alloparental care is not highly developed in these species and there is no direct evidence that the presence or number of non-breeders is associated with reductions in the workload of the ‘queen’. An alternative interpretation of mole rat groups is that the...

A practical approach to measuring the biodiversity impacts of land conversion

América P. Durán, Jonathan M. H. Green, Christopher D. West, Piero Visconti, Neil Burgess, Malika Virah-Sawmy & Andrew Balmford
1. Further progress in reducing biodiversity loss relies on the improved quantification of the connections between drivers of habitat loss and subsequent biodiversity impacts. To this end, biodiversity impact metrics should be able to report linked trends in specific human activities and changes in biodiversity state, accounting for both the ecology of different species, and the cumulative effects of historical habitat losses. These characteristics are not currently captured within a single metric. 2. Here we...

Oxidative costs of cooperation in cooperatively breeding Damaraland mole-rats

Rute Mendonça, Philippe Vullioud, Nathan Katlein, Armelle Vallat, Gaetan Glauser, Nigel Bennett & Fabrice Helfenstein
Within cooperatively breeding societies, individuals adjust cooperative contributions to maximise indirect fitness and minimize direct fitness costs. Yet, little is known about the physiological costs of cooperation, which may be detrimental to direct fitness. Oxidative stress, the imbalance between reactive oxygen species (by-products of energy production) and antioxidant protection, may represent such a cost when cooperative behaviours are energetically demanding. Oxidative stress can lead to the accumulation of cellular damage, compromising survival and reproduction, thus...

Kinetic data, oligomer data and binding data

Sara Linse, Tom Scheidt, Katja Bernfur, Michele Vendruscolo, Christopher Dobson, Samuel Cohen, Eimantas Sileikis, Martin Lundqvist, Fang Qian, Tiernan O'Malley, Thierry Bussiere, Paul Weinreb, Catherine Xu, Georg Meisl, Sean Devenish, Tuomas Knowles & Oskar Hansson
The amyloid cascade hypothesis, according to which the self-assembly of amyloid-β peptide (Aβ) is a causative process in Alzheimer’s disease, has driven many therapeutic efforts for the past 20 years. Failures of clinical trials investigating Aβ-targeted therapies have been interpreted as evidence against this hypothesis, irrespective of the characteristics and mechanisms of action of the therapeutic agents, which are highly challenging to assess. Here, we combine kinetic analyses with quantitative binding measurements to address the...

Cuttlefish show flexible and future-dependent foraging cognition

Pauline Billard, Alexandra Schnell, Nicola Clayton & Christelle Jozet-Alves
Some animals optimise their foraging activity by learning and memorising food availability, in terms of quantity and quality, and adapt their feeding behaviour accordingly. Here we investigated whether cuttlefish flexibly adapt their foraging behaviour according to the availability of their preferred prey. In Experiment 1, cuttlefish switched from a selective to an opportunistic foraging strategy (or vice versa) when the availability of their preferred prey at night was predictable versus unpredictable. In Experiment 2, cuttlefish...

Tracking the Near East origins and European dispersal of the house mouse

Thomas CUCCHI, Katerina Papayianni, Sophie Cersoy, Laetitia Aznar-Cormano, Antoine Zazzo, Régis Debruyne, Rémi Berthon, Adrian Bălășescu, Alan Simmons, François Valla, Yannis Hamilakis, Fanis Mavridis, Marjan Mashkour, Jamshid Darvish, Roohollah Siahsarvi, Fereidoun Biglari, Cameron A. Petrie, Lloyd Weeks, Alireza Sardari, Sepideh Maziar, Christiane Denys, David Orton, Emma Jenkins, Melinda Zeder, Jeremy B. Searle … & Jean-Denis Vigne
The house mouse (Mus musculus) is one of the most invasive mammals and an evolutionary model. However, the timing and components of its origin and dispersal remain poorly documented. To track its synanthropisation and subsequent biological invasion during the develoment of complex human societies, we analyzed 829 Mus specimens from 43 archaeological contexts in Southwestern Asia and Southeastern Europe, dating between 40,000 and 3,000 cal. BP, combining geometric morphometris numerical taxonomy with ancient mitochondrial DNA...

Data from: Resegmentation is an ancestral feature of the gnathostome vertebral skeleton

Katharine E. Criswell & J. Andrew Gillis
The vertebral skeleton is a defining feature of vertebrate animals. However, the mode of vertebral segmentation varies considerably between major lineages. In tetrapods, adjacent somite halves recombine to form a single vertebra through the process of ‘resegmentation’. In teleost fishes, there is considerable mixing between cells of the anterior and posterior somite halves, without clear resegmentation. To determine whether resegmentation is a tetrapod novelty, or an ancestral feature of jawed vertebrates, we tested the relationship...

Registration Year

  • 2020

Resource Types

  • Dataset
  • Text


  • University of Cambridge
  • University of Leeds
  • Smithsonian Tropical Research Institute
  • University of Oxford
  • Centre d'Ecologie Fonctionnelle et Evolutive
  • Royal Society for the Protection of Birds
  • Oklahoma State University
  • University of Exeter
  • University of Pretoria
  • Princeton University