9 Works

Bird Vocalisation Activity (BiVA) database: annotated soundscapes from the Chernobyl Exclusion Zone

P. Kendrick, L. Barçante, N.A. Beresford, S. Gashchak & M.D. Wood
Data comprise audio files captured using a Wildlife Acoustics SM3 Songmeter located on an overgrown unpaved road close to several abandoned houses with deciduous trees (including fruit trees in former gardens) in the abandoned village of Buryakovka in the Chernobyl Exclusion Zone, Ukraine. A single continuous recording of twelve hours of audio from midday until midnight on the 25th June 2015 was manually annotated by an expert (using Raven Pro interactive sound analysis software). The...

Data from: Individual consumption of supplemental food as a predictor of reproductive performance and viral infection intensity

Simon Tollington, John G. Ewen, Jason Newton, Rona A.R. McGill, Donal Smith, Aurélie Henshaw, Deborah J. Fogell, Vikash Tatayah, Andrew Greenwood, Carl G. Jones & Jim J. Groombridge
1.Supplemental food is often provided to threatened species in order to maintain or enhance reproductive fitness and thus population growth. However, its impact on individual reproductive fitness is rarely evaluated, despite being associated with both positive and negative consequences. 2. We used stable isotope analyses to characterise the relative proportional consumption of supplemental food and quantitative polymerase chain reaction (qPCR) to assess beak and feather disease viral infection intensity among parakeets. Life-history and nest-site data...

Elemental and radionuclide concentrations for several vegetation species from a site in Extremadura, Spain

C.L. Barnett, C. Wells, S. Thacker, A.J. Lawlor, J.M. Corrales Vázquez, M.D. Wood & N.A. Beresford
Data comprise elemental and radionuclide concentrations in freeze-dried Mediterranean plants, seeds and oven dried soil. The samples were collected in June 2014 along a transect located in the Monfragüe National Park which is within the province of Cáceres, western Spain (start: N 33° 49' 47.2'', W 006° 01' 55.4'', end: N 390 49'46.8'', W 0060 02' 05.1'' (geocentric World Geodetic System 1984 (GPS WG 884)). Thirty plant species (Agrostis pourretii; Campanula rapunculus; Taraxacum sp.; Taraxacum...

Data from: Metabarcoding of shrimp stomach content: harnessing a natural sampler for fish biodiversity monitoring

Andjin Siegenthaler, Owen S. Wangensteen, Ana Z. Soto, Chiara Benvenuto, Laura Corrigan & Stefano Mariani
Given their positioning and biological productivity, estuaries have long represented key providers of ecosystem services, and consequently remain under remarkable pressure from numerous forms of anthropogenic impact. The monitoring of fish communities in space and time are one of the most widespread and established approaches to assess the ecological status of estuaries and other coastal habitats, but traditional fish surveys are invasive, costly, labour intensive and highly selective. Recently, the application of metabarcoding techniques, on...

Data from: DNA metabarcoding unveils multi‐scale trophic variation in a widespread coastal opportunist

Andjin Siegenthaler, Owen S. Wangensteen, Chiara Benvenuto, Joana Campos & Stefano Mariani
A thorough understanding of ecological networks relies on comprehensive information on trophic relationships among species. Since unpicking the diet of many organisms is unattainable using traditional morphology‐based approaches, the application of high‐throughput sequencing methods represents a rapid and powerful way forward. Here, we assessed the application of DNA‐metabarcoding with nearly universal primers for the mitochondrial marker cytochrome c oxidase I (COI) in defining the trophic ecology of adult brown shrimp, Crangon crangon, in six European...

Data from: The cost of infection: Argulus foliaceus and its impact on the swimming performance of the three-spined stickleback (Gasterosteus aculeatus)

Alexander Stewart, Rhiannon Hunt, Valantine Muhawenimana, Catherine A.M.E. Wilson, Joseph A. Jackson & Joanne Cable
For fish, there can be multiple consequences of parasitic infections, including the physical impacts on swimming and the pathological costs of infection. This study utilised the three-spined stickleback (Gasterosteus aculeatus) and the ectoparasitic fish louse, Argulus foliaceus, to assess both physical (including form drag and mass) and pathological effects of infection. Both sustained (prolonged swimming within an open channel flume) and burst (C-start) swimming performance were measured on individual fish before (Trials 1-2) and after...

Data from: The tonic immobility test: do wild and captive Golden Mantella frogs (Mantella aurantiaca) have the same response?

Luiza Figueiredo Passos, Gerardo Garcia & Robert John Young
Adaptations to captivity that reduce fitness are one of many reasons, which explain the low success rate of reintroductions. One way of testing this hypothesis is to compare an important behavioural response in captive and wild members of the same species. Thanatosis, is an anti-predator strategy that reduces the risk of death from predation, which is a common behavioral response in frogs. The study subjects for this investigation were captive and wild populations of Mantella...

Data from: Genomic characterisation of the indigenous Irish Kerry cattle breed

Sam Browett, Gillian McHugo, Ian W. Richardson, David A. Magee, Stephen D. E. Park, Alan G. Fahey, John F. Kearney, Carolina N. Correia, Imtiaz A.S. Randhawa, David E. MacHugh & Imtiaz A. S. Randhawa
Kerry cattle are an endangered landrace heritage breed of cultural importance to Ireland. In the present study we have used genome-wide SNP array data to evaluate genomic diversity within the Kerry population and between Kerry cattle and other European breeds. Patterns of genetic differentiation and gene flow among breeds using phylogenetic trees with ancestry graphs highlighted historical gene flow from the British Shorthorn breed into the ancestral population of modern Kerry cattle. Principal component analysis...

Data from: Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome-wide sequence data for seven amphibians

Christopher D. Barratt, Beryl A. Bwong, Robert Jehle, H. Christoph Liedtke, Peter Nagel, Renske E. Onstein, Daniel M. Portik, Jeffrey W. Streicher & Simon P. Loader
High-throughput sequencing data have greatly improved our ability to understand the processes that contribute to current biodiversity patterns. The “vanishing refuge” diversification model is speculated for the coastal forests of eastern Africa, whereby some taxa have persisted and diversified between forest refugia, while others have switched to becoming generalists also present in non-forest habitats. Complex arrangements of geographical barriers (hydrology and topography) and ecological gradients between forest and non-forest habitats may have further influenced the...

Registration Year

  • 2018

Resource Types

  • Dataset


  • University of Salford
  • Centre for Ecology & Hydrology
  • University of Kent
  • The University of Texas at Arlington
  • German Center for Integrative Biodiversity Research
  • School of Environment & Life Sciences, University of Salford
  • Chester Zoo
  • University of Basel
  • Mauritian Wildlife Foundation
  • University of Sydney