34 Works

D5.2 - Jet drilling at simulated reservoir conditions

Simon Hahn, Volker Wittig, Sarah Jasper, Dennis Schwarz, Dhafir Albadroui, Koos Hoogland & Richard Bakker
Deliverable D5.2 presents the experimental outcome of jetting experiments at simulated reservoir conditions. Different rock types are tested under various conditions with the use of three different types of test bench. At first jetting experiments are conducted under submerged conditions in order to derive a better understanding of the governing erosion mechanism. Therefore pitting tests are combined with PIV measurements in order to derive and explain the erosion pattern of the occurring cavitation erosion and...

Data from: Airway segmentation and centerline extraction from thoracic CT – comparison of a new method to state of the art commercialized methods

Pall Jens Reynisson, Marta Scali, Erik Smistad, Erlend Fagertun Hofstad, Håkon Olav Leira, Frank Lindseth, Toril Anita Nagelhus Hernes, Tore Amundsen, Hanne Sorger & Thomas Langø
Introduction: Our motivation is increased bronchoscopic diagnostic yield and optimized preparation, for navigated bronchoscopy. In navigated bronchoscopy, virtual 3D airway visualization is often used to guide a bronchoscopic tool to peripheral lesions, synchronized with the real time video bronchoscopy. Visualization during navigated bronchoscopy, the segmentation time and methods, differs. Time consumption and logistics are two essential aspects that need to be optimized when integrating such technologies in the interventional room. We compared three different approaches...

Multimodal Molecular Imaging of Human Kidney Tissue From a 58 Year Old White Female Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Right Kidney of a 58 year old White Female donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Multimodal Molecular Imaging of Human Kidney Tissue From a 56 Year Old White Male Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Left Kidney of a 56 year old White Male donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Multimodal Molecular Imaging of Human Kidney Tissue From a 56 Year Old White Male Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Left Kidney of a 56 year old White Male donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Multimodal Molecular Imaging of Human Kidney Tissue From a 44 Year Old White Female Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Right Kidney of a 44 year old White Female donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Cellular dialogues that enable self-organization of dynamic spatial patterns

Yiteng Dang, Douwe A.J. Grundel & Hyun Youk
Cells form spatial patterns by coordinating their gene expressions. How a group of mesoscopic numbers (hundreds-to-thousands) of cells, without pre-defined morphogens and spatial organization, self-organizes spatial patterns remains incompletely understood. Of particular importance are dynamic spatial patterns - such as spiral waves that perpetually move and transmit information over macroscopic length-scales. We developed an open-source, expandable software that can simulate a field of cells communicating with any number of cell-secreted molecules in any manner. With...

The Story of the Bucky Lab

Marcel Bilow & Ulrich Knaack
A book about a university docent and one of his courses – why would you do that? And what is the academic impact? The question of impact, especially as it relates to the rapidly developing culture of publications in scientific journals, should be the topic of a separate discussion. With all of the related advantages and disadvantages it could fill an entire book – however, not this one. And yes, buildings do impact the user,...

Multimodal Molecular Imaging of Human Kidney Tissue From a 48 Year Old White Male Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Right Kidney of a 48 year old White Male donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Multimodal Molecular Imaging of Human Kidney Tissue From a 58 Year Old Black or African American Male Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Left Kidney of a 58 year old Black or African American Male donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and...

Multimodal Molecular Imaging of Human Kidney Tissue From a 53 Year Old Black or African American Male Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Left Kidney of a 53 year old Black or African American Male donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and...

Identify your affiliation with Metadata Schema 4.3

Robin Dasler & Madeleine de Smaele
The DataCite Metadata Schema is the basis for the metadata you submit to DataCite. It tells you the available fields and structure for your metadata records. Many of our members have told us that they’d really like to be able to include affiliation...

Multimodal Molecular Imaging of Human Kidney Tissue From a 66 Year Old White Female Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Left Kidney of a 66 year old White Female donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Data from: Seagrass coastal protection services reduced by invasive species expansion and megaherbivore grazing

Rebecca K. James, Marjolijn J. A. Christianen, Marieke Van Katwijk, Jaco De Smit, , Peter Herman & Tjeerd Bouma
1. Seagrasses provide an important ecosystem service by creating a stable erosion-resistant seabed that contributes to effective coastal protection. Variable morphologies and life history strategies, however, are likely to impact the sediment stabilisation capacity of different seagrass species. We question how opportunistic invasive species and increasing grazing by megaherbivores may alter sediment stabilisation services provided by established seagrass meadows, using the Caribbean as a case study. 2. Utilising two portable field-flumes that simulate unidirectional and...

Data from: Numerical simulations of targeted delivery of magnetic drug aerosols in the human upper and central respiratory system: a validation study

Sasa Kenjeres & Jimmy L. Tjin
In the present study, we investigate the concept of the targeted delivery of pharmaceutical drug aerosols in an anatomically realistic geometry of the human upper and central respiratory system. The geometry considered extends from the mouth inlet to the 8th generation of the bronchial bifurcations and is identical to the phantom model used in the experimental studies of [Banko {em et al.} (2015), Exp. Fluids, {bf 56} (117):1-12]. In our computer simulations, we combine the...

Data from: Workshop on reconstruction schemes for magnetic resonance data: summary of findings and recommendations

Esin Ozturk-Isik, Ian Marshall, Patryk Filipiak, Arnold J.V. Benjamin, Valia Guerra Ones, Rafael Ortiz Ramón, Maria Del C. Valdés Hernández & Arnold J. V. Benjamin
The high-fidelity reconstruction of compressed and low-resolution magnetic resonance (MR) data is essential for simultaneously improving patient care, accuracy in diagnosis and quality in clinical research. Sponsored by the Royal Society through the Newton Mobility Grant Scheme, we held a half-day workshop on reconstruction schemes for MR data on 17 August 2016 to discuss new ideas from related research fields that could be useful to overcome the shortcomings of the conventional reconstruction methods that have...

Multimodal Molecular Imaging of Human Kidney Tissue From a 31 Year Old White Male Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Right Kidney of a 31 year old White Male donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Multimodal Molecular Imaging of Human Kidney Tissue From a 66 Year Old White Female Donor

Jeffrey Spraggins, Elizabeth Neumann, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Multimodal molecular imaging data collected from the Left Kidney of a 66 year old White Female donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Multimodal Molecular Imaging of Human Kidney Tissue From a 61 Year Old White Female Donor

Jeffrey Spraggins, Nathan Patterson, David Anderson, Kavya Sharman, Lukasz Migas, Jamie Allen, Maya Brewer, Jennifer Harvey, Haichun Yang, Raymond Harris, Agnes Fogo, Mark deCaestecker, Danielle Gutierrez, Richard Caprioli & Raf Van de Plas
Mulltimodal molecular imaging data collected from the Left Kidney of a 61 year old White Female donor by the Biomolecular Multimodal Imaging Center (BIOMC) at Vanderbilt University. BIOMIC is a Tissue Mapping Center that is part of the NIH funded Human Biomolecular Atlas Program (HuBMAP). Datasets generated by BIOMIC combine MALDI imaging mass spectrometry with various microscopy modalities including autofluorescence and stained microscopy. Support was provided by the NIH Common Fund and National Institute of...

Data from: Charting the complete elastic properties of inorganic crystalline compounds

Maarten De Jong, Wei Chen, Thomas Angsten, Anubhav Jain, Randy Notestine, Anthony Gamst, Marcel Sluiter, Chaitanya Krishna Ande, Sybrand Van Der Zwaag, Jose J. Plata, Cormac Toher, Stefano Curtarolo, Gerbrand Ceder, Kristin A. Persson & Mark Asta
The elastic constant tensor of an inorganic compound provides a complete description of the response of the material to external stresses in the elastic limit. It thus provides fundamental insight into the nature of the bonding in the material, and it is known to correlate with many mechanical properties. Despite the importance of the elastic constant tensor, it has been measured for a very small fraction of all known inorganic compounds, a situation that limits...

DataCite Metadata Schema Documentation for the Publication and Citation of Research Data v4.3

1 Introduction 1.1 The DataCite Consortium 1.2 DataCite Community Participation 1.3 The Metadata Schema 1.4 Version 4.32 Update 2 DataCite Metadata Properties 2.1 Overview 2.2 Citation 2.3 DataCite Properties 3 XML Example 4 XML Schema 5 Other DataCite Services Appendices Appendix 1: Controlled List Definitions Appendix 2: Earlier Version Update Notes Appendix 3: Standard values for unknown information Appendix 4: Version 4.1 Changes in support of software citation Appendix 5: FORCE11 Software Citation Principles Mapping

Announcing schema 4.2

Robin Dasler & Madeleine de Smaele
The DataCite Metadata Schema is the basis for the metadata you submit to DataCite. It tells you the available fields and structure for your metadata records, and it’s what we validate against to make sure everything is as it should be. The metadata...

Data from: Alongshore variation in barnacle populations is determined by surfzone hydrodynamics

Alan L. Shanks, Steven G. Morgan, Jamie MacMahan, Ad J.H.M. Reniers & Ad J. H. M. Reniers
Larvae in the coastal ocean are transported toward shore by a variety of mechanisms. Crossing the surf zone is the last step in a shoreward migration and surf zones may act as semipermeable barriers altering delivery of larvae to the shore. We related variation in the structure of intertidal barnacle populations to surfzone width (surfzone hydrodynamics proxy), wave height, alongshore wind stress (upwelling proxy), solar radiation, and latitude at 40 rocky intertidal sites from San...

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