Data from: New resources for genetic studies in Populus nigra: genome wide SNP discovery and development of a 12k Infinium array

P. Faivre Rampant, G. Zaina, V. Jorge, S. Giacomello, V. Segura, S. Scalabrin, V. Guérin, E. De Paoli, C. Aluome, M. Viger, F. Cattonaro, A. Payne, P. PaulStephenRaj, MC. Le Paslier, A. Berard, M. R. Allwright, M. Villar, G. Taylor, C. Bastien, M. Morgante, P. Faivre-Rampant & M. C. Le Paslier
Whole genome resequencing of 51 Populus nigra (L.) individuals from across Western Europe was performed using Illumina platforms. A total number of 1,878,727 SNPs distributed along the P. nigra reference sequence were identified. The SNP calling accuracy was validated with Sanger sequencing. SNPs were selected within 14 previously identified QTL regions; 2916 expressional candidate genes related to rust resistance, wood properties, water-use efficiency and bud phenology and 1732 genes randomly spread across the genome. Over...

Registration Year

  • 2015
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Resource Types

  • Dataset
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Affiliations

  • Centre National de Génotypage
    1
  • University of Southampton
    1
  • Institut National des Sciences Appliquées Centre Val de Loire
    1
  • Istituto di Genomica Applicata
    1
  • University of Udine
    1