Abstract Histones have a long history of research in a wide range of species, leaving a legacy of complex nomenclature in the literature. Community-led discussions at the EMBO Workshop on Histone Variants in 2011 resulted in agreement amongst experts on a revised systematic protein nomenclature for histones, which is based on a combination of phylogenetic classification and historical symbol usage. Human and mouse histone gene symbols previously followed a genome-centric system that was not applicable...

Additional file 1: Summary of the NORMAN-SLE datasets (CSV format) as of 4 May 2022 [81].

Additional file 4: Summary of Zenodo citations plus DOIs per list (CSV format) as of 1 May 2022 [236].

Abstract Background The NORMAN Association ( https://www.norman-network.com/ ) initiated the NORMAN Suspect List Exchange (NORMAN-SLE; https://www.norman-network.com/nds/SLE/ ) in 2015, following the NORMAN collaborative trial on non-target screening of environmental water samples by mass spectrometry. Since then, this exchange of information on chemicals that are expected to occur in the environment, along with the accompanying expert knowledge and references, has become a valuable knowledge base for “suspect screening” lists. The NORMAN-SLE now serves as a FAIR...

Abstract Background The NORMAN Association ( https://www.norman-network.com/ ) initiated the NORMAN Suspect List Exchange (NORMAN-SLE; https://www.norman-network.com/nds/SLE/ ) in 2015, following the NORMAN collaborative trial on non-target screening of environmental water samples by mass spectrometry. Since then, this exchange of information on chemicals that are expected to occur in the environment, along with the accompanying expert knowledge and references, has become a valuable knowledge base for “suspect screening” lists. The NORMAN-SLE now serves as a FAIR...

PubChem (https://pubchem.ncbi.nlm.nih.gov/) is an open chemistry database within the National Library of Medicine at the National Institutes of Health. PubChem has served the community since 2004. Today, PubChem provides information for more than 110 million unique compounds that link to nearly 300 million bioactivities, 42 million patents, and 34 million literatures. With such massive information, PubChem serves millions of users that yield more than 10 million page views per month. As an information hub, PubChem...

Additional file 1. Fig. S1. Alternative model for collaboration among humans. A. Functional dependence on the population age structure for the fraction of younger hosts which reproduce under collaborative, $$a=0, 0

Abstract Background Symbiotic relationships are ubiquitous in the biosphere. Inter-species symbiosis is impacted by intra-specific distinctions, in particular, those defined by the age structure of a population. Older individuals compete with younger individuals for resources despite being less likely to reproduce, diminishing the fitness of the population. Conversely, however, older individuals can support the reproduction of younger individuals, increasing the population fitness. Parasitic relationships are commonly age structured, typically, more adversely affecting older hosts. Results...

Additional file 2: Overview of the NORMAN-SLE website (DOCX format) as of 30 May 2022 [82].

Additional file 2: Overview of the NORMAN-SLE website (DOCX format) as of 30 May 2022 [82].

Additional file 2. List of human histone proteins from the Histone Sequence Database for every histone gene, the available set of transcript and coding sequence GENCODE annotations were obtained from the Ensembl 105 database. Next, only protein-coding transcripts identical between Ensembl automated annotation and HAVANA manual curation were retained. In those cases where several transcripts of one gene correspond to the same amino acid protein sequence, only one record was retained with preference given to...

Additional file 2. List of human histone proteins from the Histone Sequence Database for every histone gene, the available set of transcript and coding sequence GENCODE annotations were obtained from the Ensembl 105 database. Next, only protein-coding transcripts identical between Ensembl automated annotation and HAVANA manual curation were retained. In those cases where several transcripts of one gene correspond to the same amino acid protein sequence, only one record was retained with preference given to...

Additional file 5: Authorship contributions and acknowledgements mapped to NORMAN-SLE lists (XLSX format).

Additional file 3: Summary of Zenodo view and download statistics, plus citations (CSV format) as of 28 April 2022 [235].

PubChem (https://pubchem.ncbi.nlm.nih.gov/) is an open chemistry database within the National Library of Medicine at the National Institutes of Health. PubChem has served the community since 2004. Today, PubChem provides information for more than 110 million unique compounds that link to nearly 300 million bioactivities, 42 million patents, and 34 million literatures. With such massive information, PubChem serves millions of users that yield more than 10 million page views per month. As an information hub, PubChem...

PubChem (https://pubchem.ncbi.nlm.nih.gov/) is an open chemistry database within the National Library of Medicine at the National Institutes of Health. PubChem has served the community since 2004. Today, PubChem provides information for more than 110 million unique compounds that link to nearly 300 million bioactivities, 42 million patents, and 34 million literatures. With such massive information, PubChem serves millions of users that yield more than 10 million page views per month. As an information hub, PubChem...

Abstract Histones have a long history of research in a wide range of species, leaving a legacy of complex nomenclature in the literature. Community-led discussions at the EMBO Workshop on Histone Variants in 2011 resulted in agreement amongst experts on a revised systematic protein nomenclature for histones, which is based on a combination of phylogenetic classification and historical symbol usage. Human and mouse histone gene symbols previously followed a genome-centric system that was not applicable...

Additional file 1. Gene nomenclature for chimpanzee, rhesus macaque, dog, cat, pig, horse and cattle histone genes. For each gene, the VGNC ID, gene symbol and gene name are provided. Where applicable, the HGNC ID for each orthologous human gene is listed. Full Symbol Reports for each gene can be accessed using these IDs at https://vertebrate.genenames.org/ .

Additional file 1. Gene nomenclature for chimpanzee, rhesus macaque, dog, cat, pig, horse and cattle histone genes. For each gene, the VGNC ID, gene symbol and gene name are provided. Where applicable, the HGNC ID for each orthologous human gene is listed. Full Symbol Reports for each gene can be accessed using these IDs at https://vertebrate.genenames.org/ .

Additional file 1. Fig. S1. Alternative model for collaboration among humans. A. Functional dependence on the population age structure for the fraction of younger hosts which reproduce under collaborative, $$a=0, 0

Abstract Background Symbiotic relationships are ubiquitous in the biosphere. Inter-species symbiosis is impacted by intra-specific distinctions, in particular, those defined by the age structure of a population. Older individuals compete with younger individuals for resources despite being less likely to reproduce, diminishing the fitness of the population. Conversely, however, older individuals can support the reproduction of younger individuals, increasing the population fitness. Parasitic relationships are commonly age structured, typically, more adversely affecting older hosts. Results...

Additional file 1: Summary of the NORMAN-SLE datasets (CSV format) as of 4 May 2022 [81].

Additional file 3: Summary of Zenodo view and download statistics, plus citations (CSV format) as of 28 April 2022 [235].

Additional file 4: Summary of Zenodo citations plus DOIs per list (CSV format) as of 1 May 2022 [236].

Additional file 5: Authorship contributions and acknowledgements mapped to NORMAN-SLE lists (XLSX format).