16 Works

Data from: The effect of demographic correlations on the stochastic population dynamics of perennial plants

Aldo Compagnoni, Andrew J. Bibian, Brad M. Ochocki, Haldre S. Rogers, Emily L. Schultz, Michelle E. Sneck, Bret D. Elderd, Amy M. Iler, David W. Inouye, Hans Jacquemyn, Tom E.X. Miller & Tom E. X. Miller
Understanding the influence of environmental variability on population dynamics is a fundamental goal of ecology. Theory suggests that, for populations in variable environments, temporal correlations between demographic vital rates (e.g., growth, survival, reproduction) can increase (if positive) or decrease (if negative) the variability of year-to-year population growth. Because this variability generally decreases long-term population viability, vital rate correlations may importantly affect population dynamics in stochastic environments. Despite long-standing theoretical interest, it is unclear whether vital...

Data from: Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow

Scott P. Egan, Gregory J. Ragland, Lauren Assour, Thomas H. Q. Powell, Glen R. Hood, Scott Emrich, Patrik Nosil, Jeffrey L. Feder & Thomas H.Q. Powell
Theory predicts that speciation-with-gene-flow is more likely when the consequences of selection for population divergence transitions from mainly direct effects of selection acting on individual genes to a collective property of all selected genes in the genome. Thus, understanding the direct impacts of ecologically based selection, as well as the indirect effects due to correlations among loci, is critical to understanding speciation. Here, we measure the genome-wide impacts of host-associated selection between hawthorn and apple...

Data from: Legacy effects of developmental stages determine the functional role of predators

Volker H.W. Rudolf & Benjamin G. Van Allen
Predators are instrumental in structuring natural communities and ecosystem processes. The strong effects of predators are often attributed to their high trophic position in the food web. However, most predators have to grow and move up the food chain before reaching their final trophic position and during this developmental process, their traits, interactions, and abundances change. Here we show that this process of “moving up” the food chain during development strongly determines the ecological role...

Data from: Multiple natural enemies cause distance-dependent mortality at the seed-to-seedling transition

Evan C. Fricke, Joshua J. Tewksbury & Haldre S. Rogers
Specialised natural enemies maintain forest diversity by reducing tree survival in a density- or distance-dependent manner. Fungal pathogens, insects and mammals are the enemy types most commonly hypothesised to cause this phenomenon. Still, their relative importance remains largely unknown, as robust manipulative experiments have generally targeted a single enemy type and life history stage. Here, we use fungicide, insecticide and physical exclosure treatments to isolate the impacts of each enemy type on two life history...

Data from: Deadly competition and life-saving predation: the potential for alternative stable states in a stage-structured predator–prey system

Benjamin J. Toscano, Bianca R. Rombado, Volker H.W. Rudolf & Volker H. W. Rudolf
Predators often undergo complete ontogenetic diet shifts, engaging in resource competition with species that become their prey during later developmental stages. Theory posits that this mix of stage-specific competition and predation, termed life-history intraguild predation (LHIGP), can lead to alternative stable states. In one state, prey exclude predators through competition (i.e. juvenile competitive bottleneck), while in the alternative, adult predators control prey density to limit competition and foster coexistence. Nevertheless, the interactions leading to these...

Data from: Rapid evolution of dispersal ability makes biological invasions faster and more variable

Brad M. Ochocki & Tom E. X. Miller
Genetic variation in dispersal ability may result in the spatial sorting of alleles during range expansion. Recent theory suggests that spatial sorting can favour the rapid evolution of life history traits at expanding fronts, and therefore modify the ecological dynamics of range expansion. Here we test this prediction by disrupting spatial sorting in replicated invasions of the bean beetle Callosobruchus maculatus across homogeneous experimental landscapes. We show that spatial sorting promotes rapid evolution of dispersal...

Data from: Multilocus approaches for the measurement of selection on correlated genetic loci

Zachariah Gompert, Scott P. Egan, Rowan D. H. Barrett, Jeffrey L. Feder & Patrik Nosil
The study of ecological speciation is inherently linked to the study of selection. Methods for estimating phenotypic selection within a generation based on associations between trait values and fitness (e.g. survival) of individuals are established. These methods attempt to disentangle selection acting directly on a trait from indirect selection caused by correlations with other traits via multivariate statistical approaches (i.e. inference of selection gradients). The estimation of selection on genotypic or genomic variation could also...

Data from: Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis

Dingqiao Wen, Yun Yu, Matthew W. Hahn & Luay Nakhleh
The role of hybridization and subsequent introgression has been demonstrated in an increasing number of species. Recently, Fontaine et al. (Science, 347, 2015, 1258524) conducted a phylogenomic analysis of six members of the Anopheles gambiae species complex. Their analysis revealed a reticulate evolutionary history and pointed to extensive introgression on all four autosomal arms. The study further highlighted the complex evolutionary signals that the co-occurrence of incomplete lineage sorting (ILS) and introgression can give rise...

Data from: Bayesian inference of reticulate phylogenies under the multispecies network coalescent

Luay Nakhleh, Dingqiao Wen & Yun Yu
The multispecies coalescent (MSC) is a statistical framework that models how gene genealogies grow within the branches of a species tree. The field of computational phylogenetics has witnessed an explosion in the development of methods for species tree inference under MSC, owing mainly to the accumulating evidence of incomplete lineage sorting in phylogenomic analyses. However, the evolutionary history of a set of genomes, or species, could be reticulate due to the occurrence of evolutionary processes...

Data from: Environmental DNA (eDNA) detects the invasive rusty crayfish (Orconectes rusticus) at low abundances

Matthew M. Dougherty, Eric R. Larson, Mark A. Renshaw, Crysta A. Gantz, Scott P. Egan, Daniel M. Erickson & David M. Lodge
Early detection is invaluable for the cost-effective control and eradication of invasive species, yet many traditional sampling techniques are ineffective at the low population abundances found at the onset of the invasion process. Environmental DNA (eDNA) is a promising and sensitive tool for early detection of some invasive species, but its efficacy has not yet been evaluated for many taxonomic groups and habitat types. We evaluated the ability of eDNA to detect the invasive rusty...

Data from: Seasonal population and individual niche dynamics in a tetra fish in the Pantanal wetlands

Raul Costa-Pereira, Luiz E. R. Tavares, Plínio Barbosa De Camargo & Márcio Silva Araújo
In seasonal tropical regions, rainfall and/or temporary floods during the wet season generally increase the abundance and diversity of food resources to many consumers as compared to the dry season. Therefore, seasonality can affect intraspecific competition and ecological opportunity, which are two important ecological mechanisms underlying population and individual niche variations. Here, we took advantage of the strong seasonality in the Pantanal wetlands to investigate how within- and between-individual diet variations relate to seasonal population...

Data from: Genetic variation in social environment construction influences the development of aggressive behavior in Drosophila melanogaster

Julia B. Saltz
Individuals are not merely subject to their social environments; they choose and create them, through a process called social environment (or social niche) construction. When genotypes differ in social environment-constructing behaviors, different genotypes are expected to experience different social environments. As social experience often affects behavioral development, quantitative genetics and psychology theories predict that genetic variation in social environment construction should have an important role in determining phenotypic variation; however, this hypothesis has not been...

Fruit/seed traits and phenology of trees in Ranomafana National Park, Madagascar

Onja H. Razafindratsima & Amy E. Dunham
This dataset contains information on fruit/seed traits of plants in Ranomafana National Park, Madagascar as well as a summary of their fruiting phenology for the period of July 2012 - June 2014.

Data from: A native plant competitor mediates the impact of above- and belowground damage on an invasive tree

Juli Carrillo & Evan Siemann
Plant competition may mediate the impacts of herbivory on invasive plant species through effects on plant growth and defense. This may predictably depend on whether herbivory occurs above- or belowground and on relative plant competitive ability. We simulated the potential impact of above- or belowground damage by biocontrol agents on the growth of a woody invader (Chinese tallow tree, Triadica sebifera) through artificial herbivory, with or without competition with a native grass, little bluestem (Schizachyrium...

Data from: Plant-fungal symbiosis affects litter decomposition during primary succession

Lukas Bell-Dereske, Xiaodong Gao, Caroline A. Masiello, Robert L. Sinsabaugh, Sarah M. Emery & Jennifer A. Rudgers
Microbial symbionts of plants can affect decomposition by altering the quality or quantity of host plant tissue (substrate) or the micro-environment where decomposition occurs (conditioning). In C3 grasses, foliar fungal endophytes (Clavicipitaceae) can increase plant resistance to drought and/or produce alkaloids that reduce herbivory – effects that may also influence host litter composition and subsequent litter decomposition. We studied the effect of the endophyte Epichloë sp. on litter decomposition in the Great Lakes dunes (USA)...

Data from: Genetic mixture of multiple source populations accelerates invasive range expansion

Natalie M. Wagner, Brad M. Ochocki, Kerri M. Crawford, Aldo Compagnoni, Tom E. X. Miller, Natalie K. Wagner & Tom E.X. Miller
A wealth of population genetic studies have documented that many successful biological invasions stem from multiple introductions from genetically distinct source populations. Yet, mechanistic understanding of whether and how genetic mixture promotes invasiveness has lagged behind documentation that such mixture commonly occurs. We conducted a laboratory experiment to test the influence of genetic mixture on the velocity of invasive range expansion. The mechanistic basis for effects of genetic mixture could include evolutionary responses (mixed invasions...

Registration Year

  • 2016

Resource Types

  • Dataset


  • Rice University
  • University of Notre Dame
  • Notre Dame University
  • University of Sheffield
  • Sao Paulo State University
  • University of Washington
  • Utah State University
  • South Dakota State University
  • Aarhus University
  • University of Louisville