Data from: Identification and validation of single nucleotide polymorphisms as tools to detect hybridization and population structure in freshwater stingraysVanessa Paes Cruz, Manuel Vera, Belén Gomes Pardo, John Taggart, Paulino Martinez, Claudio Oliveira & Fausto Foresti
Single nucleotide polymorphism (SNP) markers were identified and validated for two stingrays species, Potamotrygon motoro and Potamotrygon falkneri, using double digest restriction-site associated DNA (ddRAD) reads using 454-Roche technology. A total of 226 774 reads (65.5 Mb) were obtained (mean read length 289 ± 183 bp) detecting a total of 5399 contigs (mean contig length: 396 ± 91 bp). Mining this data set, a panel of 143 in silico SNPs was selected. Eighty-two of these...
Vision is a critical sense for organismal survival with visual sensitivities strongly shaped by the environment. Some freshwater fishes with a Gondwanan origin are distributed in both South American rivers including the Amazon, as well as African rivers and lakes. These different habitats likely required adaptations to murky and clear environments. In this study, we compare the molecular basis of Amazonian and African cichlid fishes’ visual systems. We used next generation sequencing of genomes and...
Data from: Persistence of the effect of frugivore identity on post-dispersal seed fate: consequences for the assessment of functional redundancyAna Paula Lugon, Marion Boutefeu, Emilie Bovy, Fernando Z. Vaz-De-Mello, Marie-Claude Huynen, Mauro Galetti & Laurence Culot
Large frugivores play an important role as seed dispersers and their extinction may affect plant regeneration. The consequences of such extinctions depend on the likelihood of other species being functionally redundant and on how post-dispersal events are affected. We assess the functional redundancy of two seed dispersers of the Atlantic Forest, the muriqui (Brachyteles arachnoides) and the tapir (Tapirus terrestris) through the comparison of their seed dispersal quality, taking into account post-dispersal events. We compare...
Climate models predict that the frequency, intensity and duration of drought events will increase in tropical regions. Although water withdrawal from deep soil layers is generally considered to be an efficient adaptation to drought, there is little information on the role played by deep roots in tropical forests. Tropical Eucalyptus plantations managed in short rotation cycles are simple forest ecosystems that may provide an insight into the water use by trees in tropical forests. The...
Data from: Transcontinental dispersal, ecological opportunity and origins of an adaptive radiation in the Neotropical catfish genus Hypostomus (Siluriformes: Loricariidae)Gabriel Silva, Fabio Roxo, Nathan Lujan, Victor Tagliacolo, Cláudio Zawadzki, Claudio Oliveira, Victor A. Tagliacollo & Nathan K. Lujan
Ecological opportunity is often proposed as a driver of accelerated diversification, but evidence has been largely derived from either contemporary island radiations or the fossil record. Here, we investigate the potential influence of ecological opportunity on a transcontinental radiation of South American freshwater fishes. We generate a species-dense, time-calibrated molecular phylogeny for the suckermouth armored catfish subfamily Hypostominae, with a focus on the species-rich and geographically widespread genus Hypostomus. We use the resulting chronogram to...
Data from: Beyond neutral and forbidden links: morphological matches and the assembly of mutualistic hawkmoth-plant networksFederico D. Sazatornil, Marcela Moré, Santiago Benitez-Vieyra, Andrea A. Cocucci, Ian J. Kitching, Boris O. Schlumpberger, Paulo E. Oliveira, Marlies Sazima & Felipe W. Amorim
A major challenge in evolutionary ecology is to understand how co-evolutionary processes shape patterns of interactions between species at community level. Pollination of flowers with long corolla tubes by long-tongued hawkmoths has been invoked as a showcase model of co-evolution. Recently, optimal foraging models have predicted that there might be a close association between mouthparts' length and the corolla depth of the visited flowers, thus favouring trait convergence and specialization at community level. Here, we...
Data from: eDNA metabarcoding: a promising method for anuran surveys in highly diverse tropical forestsCarla Martins Lopes, Thais Sasso, Alice Valentini, Tony Dejean, Marcio Martins, Kelly R. Zamudio & Célio F. B. Haddad
Understanding the geographical distribution and community composition of species is crucial to monitor species persistence and define effective conservation strategies. Environmental DNA (eDNA) has emerged as a powerful noninvasive tool for species detection. However, most eDNA survey methods have been developed and applied in temperate zones. We tested the feasibility of using eDNA to survey anurans in tropical streams in the Brazilian Atlantic forest and compared the results with short-term visual and audio surveys. We...
Data from: Phylogeographic model selection leads to insight into the evolutionary history of four-eyed frogsMaria Tereza C. Thome & Bryan C. Carstens
Phylogeographic research investigates biodiversity at the interface between populations and species, in a temporal and geographic context. Phylogeography has benefited from analytical approaches that allow empiricists to estimate parameters of interest from the genetic data (e.g., θ = 4Neμ, population divergence, gene flow), and the widespread availability of genomic data allow such parameters to be estimated with greater precision. However, the actual inferences made by phylogeographers remain dependent on qualitative interpretations derived from these parameters’...
Data from: Seasonal population and individual niche dynamics in a tetra fish in the Pantanal wetlandsRaul Costa-Pereira, Luiz E. R. Tavares, Plínio Barbosa De Camargo & Márcio Silva Araújo
In seasonal tropical regions, rainfall and/or temporary floods during the wet season generally increase the abundance and diversity of food resources to many consumers as compared to the dry season. Therefore, seasonality can affect intraspecific competition and ecological opportunity, which are two important ecological mechanisms underlying population and individual niche variations. Here, we took advantage of the strong seasonality in the Pantanal wetlands to investigate how within- and between-individual diet variations relate to seasonal population...
Understanding how animal groups respond to contemporary habitat loss and fragmentation is essential for development of strategies for species conservation. Until now, there has been no consensus about how landscape degradation affects the diversity and distribution of Neotropical bats. Some studies demonstrate population declines and species loss in impacted areas, although the magnitude and generality of these effects on bat community structure are unclear. Empirical fragmentation thresholds predict an accentuated drop in biodiversity, and species...
Sao Paulo State University10
University of Sao Paulo3
Universidade Federal de Mato Grosso2
University of Liège1
The Ohio State University1
University of Girona1
University of Santiago de Compostela1
Natural History Museum1
National Scientific and Technical Research Council1