5 Works

Data from: Bioclimatic variables derived from remote sensing: assessment and application for species distribution modeling

Eric Waltari, Ronny Schroeder, Kyle McDonald, Robert P. Anderson & Ana Carnaval
Remote sensing techniques offer an opportunity to improve biodiversity modeling and prediction worldwide. Yet, to date, the weather-station based WorldClim dataset has been the primary source of temperature and precipitation information used in correlative species distribution models. WorldClim consists of grids interpolated from in situ station data recorded primarily from 1960 to 1990. Those datasets suffer from uneven geographic coverage, with many areas of Earth poorly represented. Here, we compare two remote sensing data sources...

Data from: The Arabidopsis kinome: phylogeny and evolutionary insights into functional diversification

Monika Zulawski, Gunnar Schulze, Rostyslav Braginets, Stefanie Hartmann & Waltraud X. Schulze
Background: Protein kinases constitute a particularly large protein family in Arabidopsis with important functions in cellular signal transduction networks. At the same time Arabidopsis is a model plant with high frequencies of gene duplications. Here, we have conducted a systematic analysis of the Arabidopsis kinase complement, the kinome, with particular focus on gene duplication events. We matched Arabidopsis proteins to a Hidden-Markov Model of eukaryotic kinases and computed a phylogeny of 942 Arabidopsis protein kinase...

Data from: Meta-analysis of Arabidopsis thaliana phospho-proteomics data reveals compartmentalization of phosphorylation motifs

Klaas J. Van Wijk, Giulia Friso, Dirk Walther & Waltraud X. Schulze
Protein (de)phosphorylation plays an important role in plants. To provide a robust foundation for subcellular phosphorylation signaling network analysis and kinase-substrate relationships, we performed a meta-analysis of 27 published and unpublished in-house mass spectrometry–based phospho-proteome data sets for Arabidopsis thaliana covering a range of processes, (non)photosynthetic tissue types, and cell cultures. This resulted in an assembly of 60,366 phospho-peptides matching to 8141 nonredundant proteins. Filtering the data for quality and consistency generated a set of...

Data from: Targeted re-sequencing of five Douglas-fir provenances reveals population structure and putative target genes of positive selection

Thomas Müller, Fabian Freund, Henning Wildhagen & Karl J. Schmid
Douglas-fir (Pseudotsuga menziesii) occurs in a coastal and an interior variety that differ in drought tolerance and other adaptive traits. To characterize genome-wide levels of genetic diversity in coding regions and to identify genes involved in local adaptation, we used targeted sequence capture to re-sequence 72 trees representing one interior and four coastal provenances. A custom NimbleGen sequence capture array was designed from 57,110 putative unique transcripts (PUTs) to enrich genomic sequencing libraries for these...

Data from: Convergent and correlated evolution of major life-history traits in the angiosperm genus Leucadendron (Proteaceae)

Jeanne Tonnabel, Agnès Mignot, Emmanuel J. P. Douzery, Anthony G. Rebelo, Frank M. Schurr, Jeremy Midgley, Nicola Illing, Fabienne Justy, Denis Orcel & Isabelle Olivieri
Natural selection is expected to cause convergence of life histories among taxa as well as correlated evolution of different life-history traits. Here, we quantify the extent of convergence of five key life-history traits (adult fire survival, seed storage, degree of sexual dimorphism, pollination mode, and seed-dispersal mode) and test hypotheses about their correlated evolution in the genus Leucadendron (Proteaceae) from the fire-prone South African fynbos. We reconstructed a new molecular phylogeny of this highly diverse...

Registration Year

  • 2014
    5

Resource Types

  • Dataset
    5

Affiliations

  • University of Hohenheim
    5
  • Max Planck Institute for Molecular Plant Physiology
    2
  • City University of New York
    1
  • South African National Biodiversity Institute
    1
  • Institut des Sciences de l'Evolution de Montpellier
    1
  • Forest Research Institute
    1
  • University of Potsdam
    1
  • University of Cape Town
    1
  • American Museum of Natural History
    1
  • Queens College, CUNY
    1