4 Works

Channel capacity bootstrap inferences from experimental data for \"First-principles prediction of the information processing capacity of a simple genetic circuit.\"

Manuel Razo-Mejia, Rob Phillips, Sarah Marzen, Griffin Chure, Rachel Taubman & Muir Morrison
The series of CSVs contain the channel capacity bootstrap estimates for each experimental set used on "First-principles prediction of the information processing capacity of a simple genetic circuit." Each dataset was analyzed twice, one where the expression data matches the inducer concentration at which the cells were grown, and another where the data were shuffled. For more details please see the corresponding website for the article: https://www.rpgroup.caltech.edu/chann_cap/

Data from: Evidence for convergent evolution of ultrasonic hearing in toothed whales (Cetacea: Odontoceti)

Rachel A. Racicot, Robert W. Boessenecker, Simon A.F. Darroch & Jonathan H. Geisler
Toothed whales (Cetacea: Odontoceti) are the most diverse group of modern cetaceans, originating during the Eocene/Oligocene transition ~38 million years ago. All extant odontocetes echolocate; a single origin for this behavior is supported by a unique facial source for ultrasonic vocalizations and a cochlea adapted for hearing the corresponding echoes. The craniofacial and inner ear morphology of Oligocene odontocetes support a rapid (Simocetus and Olympicetus suggest an ability to generate ultrasonic sound, until now, the...

Cell intensities extracted from microscopy images for \"First-principles prediction of the information processing capacity of a simple genetic circuit.\"

Manuel Razo-Mejia, Rob Phillips, Sarah Marzen, Griffin Chure, Rachel Taubman & Muir Morrison
These data correspond to the single-cell mean intensity values obtained from microscopy images used to quantify fluorescence and compute gene expression distributions due to the activity of the Lac repressor molecule in E. coli cells. This information was used to compute the information processing capacity of the simple repression motif. These data are separated by the operator and repressor copy number we examined. Please see the main text or the paper website at https://mrazomej.github.io/chann_cap/analysis for...

Microscopy image files for \"First-principles prediction of the information processing capacity of a simple genetic circuit.\"

Manuel Razo-Mejia, Rob Phillips, Sarah Marzen, Rachel Taubman, Muir Morrison & Griffin Chure
These data correspond to the raw microscopy images used to quantify fluorescence and compute gene expression distributions due to the activity of the Lac repressor molecule in E. coli cells. These images were passed through an image analysis pipeline which segmented individual cells and computed the mean pixel value for each cell. These data are separated by the operator we examined. A single strain was measured in twelve different inducer concentrations for each dataset with...

Registration Year

  • 2019
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Resource Types

  • Dataset
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Affiliations

  • Scripps College
    4
  • California Institute of Technology
    3
  • College of Charleston
    1
  • New York Institute of Technology
    1
  • Vanderbilt University
    1