Data from: Ocean acidification induces biochemical and morphological changes in the calcification process of large benthic foraminiferaMartina De Freitas Prazeres, Sven Uthicke, John M. Pandolfi & M. Prazeres
Large benthic foraminifera are significant contributors to sediment formation on coral reefs, yet they are vulnerable to ocean acidification. Here, we assessed the biochemical and morphological impacts of acidification on the calcification of Amphistegina lessonii and Marginopora vertebralis exposed to different pH conditions. We measured growth rates (surface area and buoyant weight) and Ca-ATPase and Mg-ATPase activities and calculated shell density using micro-computer tomography images. In A. lessonii, we detected a significant decrease in buoyant...
Data from: Less is more: extreme genome complexity reduction with ddRAD using Ion Torrent semiconductor technologyLilian Pukk, Freed Ahmad, Shihab Hasan, Veljo Kisand, Riho Gross & Anti Vasemägi
Massively parallel sequencing a small proportion of the whole genome at high coverage enables answering a wide range of questions from molecular evolution and evolutionary biology to animal and plant breeding and forensics. In this study, we describe the development of restriction-site associated DNA (RAD) sequencing approach for Ion Torrent PGM platform. Our protocol results in extreme genome complexity reduction using two rare-cutting restriction enzymes and strict size selection of the library allowing sequencing of...
Sexual selection is widely appreciated for generating remarkable phenotypic diversity, but its contribution to adaptation and the purging of deleterious mutations is unresolved. To provide insight into the impact of sexual selection on naturally segregating polymorphisms across the genome, we previously evolved 12 populations of Drosophila serrata in a novel environment employing a factorial manipulation of the opportunities for natural and sexual selection. Here, we genotype more than 1,400 SNPs in the evolved populations and...
Data from: Catchment zoning for freshwater conservation: refining plans to enhance action on the groundVirgilio Hermoso, Lorenzo Cattarino, Mark J. Kennard, Matthew Watts, Simon Linke & Mathew Watts
1. Recent advances in freshwater conservation planning allow addressing some of the specific needs of these systems. These include spatial connectivity or propagation of threats along stream networks, essential to ensure the maintenance of ecosystem processes and the biodiversity they sustain. However, these peculiarities make conservation recommendations difficult to implement as they often require considering large areas that cannot be managed under conventional conservation schemes (e.g. strict protection). 2. To facilitate the implementation of conservation...
Aim: To discover and evaluate potential dispersal barriers across the Indo-West Pacific Ocean and to develop spatially explicit hypotheses regarding the location of barriers and their capacity to filter taxa. Additionally, to compare model predictions with previously described barriers and build a more thorough understanding of the region's biogeographic patterns. Location: The reefs of the Indo-West Pacific Ocean, from 100 to 170°E and from 30°N to 30°S. Methods: A biophysical larval dispersal model was used...
Data from: High-throughput genotyping for species identification and diversity assessment in germplasm collectionsAnnaliese S. Mason, Jing Zhang, Reece Tollenaere, Paula Vasquez Teuber, Jessica Dalton-Morgan, Liyong Hu, Guijun Yan, David Edwards, Robert Redden & Jacqueline Batley
Germplasm collections provide an extremely valuable resource for breeders and researchers. However, misclassification of accessions by species often hinders the effective use of these collections. We propose that use of high-throughput genotyping tools can provide a fast, efficient and cost-effective way of confirming species in germplasm collections, as well as providing valuable genetic diversity data. We genotyped 180 Brassicaceae samples sourced from the Australian Grains Genebank across the recently released Illumina Infinium Brassica 60K SNP...
Data from: Not the time or the place: the missing spatio-temporal link in publicly available genetic dataLisa C. Pope, Libby Liggins, Jude Keyse, Silvia B. Carvalho & Cynthia Riginos
Genetic data are being generated at unprecedented rates. Policies of many journals, institutions and funding bodies aim to ensure that these data are publicly archived so that published results are reproducible. Additionally, publicly archived data can be ‘repurposed’ to address new questions in the future. In 2011, along with other leading journals in ecology and evolution, Molecular Ecology implemented mandatory public data archiving (the Joint Data Archiving Policy). To evaluate the effect of this policy,...
Data from: Biodiversity gains from efficient use of private sponsorship for flagship species conservationJoseph R. Bennett, Richard Maloney & Hugh P. Possingham
To address the global extinction crisis, both efficient use of existing conservation funding and new sources of funding are vital. Private sponsorship of charismatic ‘flagship’ species conservation represents an important source of new funding, but has been criticized as being inefficient. However, the ancillary benefits of privately sponsored flagship species conservation via actions benefiting other species have not been quantified, nor have the benefits of incorporating such sponsorship into objective prioritization protocols. Here, we use...
Data from: Polymorphisms in a desaturase 2 ortholog associate with cuticular hydrocarbon and male mating success variation in a natural population of Drosophila serrataJessica Ivory-Church, Francesca D. Frentiu & Stephen F. Chenoweth
Elucidating the nature of genetic variation underlying both sexually selected traits and the fitness components of sexual selection is essential to understanding the broader consequences of sexual selection as an evolutionary process. To date, there have been relatively few attempts to connect the genetic variance in sexually selected traits with segregating DNA sequence polymorphisms. We set out to address this in a well-characterized sexual selection system – the cuticular hydrocarbons (CHCs) of Drosophila serrata –...
Data from: Systematic review: unmet supportive care needs in people diagnosed with chronic liver diseasePatricia C. Valery, Elizabeth Powell, Neta Moses, Michael Volk, Steven M. McPhail, Paul Clark & Jennifer Martin
Objective: People with chronic liver disease, particularly those with decompensated cirrhosis, experience several potentially debilitating complications that can have a significant impact on activities of daily living and quality of life. These impairments combined with the associated complex treatment mean that they are faced with specific and high levels of supportive care needs. We aimed to review reported perspectives, experiences and concerns of people with chronic liver disease worldwide. This information is necessary to guide...
Data from: Relative deprivation and relative wealth enhances anti-immigrant sentiments: the v-curve re-examinedJolanda Jetten, Frank Mols & Tom Postmes
Previous research has shown that negative attitudes towards immigrants and support for anti-immigrant parties are observed both among those experiencing relative deprivation and those experiencing relative gratification (so called v-curve). Whereas the effect of relative deprivation is intuitive, the effect of relative gratification is more difficult to explain. Why would economic prosperity provoke negative attitudes towards immigrants? We first present correlational (Study 1) and experimental (Study 2) support for the v-curve. In Study 1, in...
Data from: Associations of bone mineral density with lean mass, fat mass, and dietary patterns in postmenopausal Chinese women: a 2-year prospective studyYongjie Chen, Jing Xiang, Zhiqiang Wang, Yaming Xiao, Dongmei Zhang, Xia Chen, Huiting Li, Meina Liu & Qiuju Zhang
Objective: To assess factors associated with bone mineral density (BMD) in postmenopausal women in a longitudinal study, and to examine the relative contribution of lean mass, fat mass, dietary patterns, and years since menopause to BMD. Methods: Two hundred and eighty-two postmenopausal women were randomly selected from Hongqi Community Health Center, in Harbin City, China. All participants were followed up from 2009 to 2011. Dietary data were collected using a Food Frequency Questionnaire. BMD of...
Data from: Nature of the coupling between neural drive and force-generating capacity in the human quadriceps muscleFrançois Hug, Clément Goupille, Daniel Baum, Brent Raiteri, Paul Hodges, Kylie Tucker, Paul W. Hodges & Brent J. Raiteri
The force produced by a muscle depends on both the neural drive it receives and several biomechanical factors. When multiple muscles act on a single joint the nature of the relationship between the neural drive and force-generating capacity of the synergistic muscles is largely unknown. This study aimed to determine the relationship between the ratio of neural drive and the ratio of muscle force-generating capacity between two synergist muscles (vastus lateralis[VL] and medialis[VM]) in humans....
Data from: Mother-offspring distances reflect sex differences in fine-scale genetic structure of eastern grey kangaroosWendy J. King, Dany Garant & Marco Festa-Bianchet
Natal dispersal affects life history and population biology and causes gene flow. In mammals, dispersal is usually male-biased so that females tend to be philopatric and surrounded by matrilineal kin, which may lead to preferential associations among female kin. Here we combine genetic analyses and behavioral observations to investigate spatial genetic structure and sex-biased dispersal patterns in a high-density population of mammals showing fission–fusion group dynamics. We studied eastern grey kangaroos (Macropus giganteus) over 2...
Data from: Benefits and challenges of scaling up expansion of marine protected area networks in the Verde Island Passage, Central PhilippinesVera Horigue, Robert L. Pressey, Morena Mills, Jana Brotanková, Reniel Cabral & Serge Andrefouet
Locally-established marine protected areas (MPAs) have been proven to achieve local-scale fisheries and conservation objectives. However, since many of these MPAs were not designed to form ecologically-connected networks, their contributions to broader-scale goals such as complementarity and connectivity can be limited. In contrast, integrated networks of MPAs designed with systematic conservation planning are assumed to be more effective—ecologically, socially, and economically—than collections of locally-established MPAs. There is, however, little empirical evidence that clearly demonstrates the...
University of Queensland40
University of Melbourne4
University of Sydney3
Commonwealth Scientific and Industrial Research Organisation3
University of Exeter3
Université de Sherbrooke2
University of Kansas1
Victoria University of Wellington1
QIMR Berghofer Medical Research Institute1
California State University, Northridge1