110 Works

Additional material associated with the Matters Arising article published in Nature by Munday and colleagues

Philip Munday, Danielle Dixson, Megan Welch, Douglas Chivers, Paolo Domenici, Martin Grosell, Rachel Heuer, Geoffrey Jones, Mark McCormick, Mark Meekan, Göran Nilsson, Timothy Ravasi & Sue-Ann Watson

Re-assessment of the climatic controls on the carbon and water fluxes of a boreal aspen forest over 1996-2016: changing sensitivity to long-term climatic conditions

Peng Liu, Alan Barr, Tianshan Zha, T Black, Rachhpal Jassal, Zoran Nesic, Warren Helgason, Xin Jia & Yun Tian
Recent evidence suggests that the relationships between climate and boreal tree growth are generally non-stationary; however, it remains uncertain whether the relationships between climate and carbon (C) fluxes of boreal forests are stationary or have changed over recent decades. In this study, we used continuous eddy-covariance and microclimate data over 21 years (1996-2016) from a 100-year-old trembling aspen stand in central Saskatchewan, Canada to assess the relationships between climate and ecosystem C and water fluxes....

Northern Bobwhite juvenile survival southwest Missouri 2016-2018

Emily Sinnott, Frank Thompson, Mitch Weegman & Thomas Thompson
These data and code are associated with the publication in Ornithological Applications entitled "Northern Bobwhite juvenile survival is greater on native grasslands managed with fire and grazing, and lower in non-native field borders and strip crop fields." We evaluated the influence of brood age, vegetation cover type, woody vegetation structure, habitat management, and landscape cover on juvenile survival in southwest Missouri 2016-2018.

A high-throughput skim-sequencing approach for genotyping, dosage estimation and identifying translocations

Laxman Adhikari, Jesse Poland, Sandesh Shrestha, Shuanyge Wu, Jared Crain, Lianglian Gao, Byron Evers, Duane Wilson, Yoonha Ju, Dal-Hoe Koo, Pierre Hulc, Curtis Pozniak, Sean Walkowiak, Xiaoyun Wang, Jing Wu, Jeffrey Glaubitz, Lee DeHaan & Bernd Friebe
An optimized, high-throughput and cost-effective genotyping method applicable to various crop breeding populations is very important in this genomic era. We have developed an optimized Nextera skim-sequencing (skim-seq) approach to genotype different populations that can be used for genetics studies and genomics-assisted breeding. We performed skim-seq on a variety of populations developed through doubled haploid (DH) technology, inter-specific recombinants developed through introgression, amphidiploid developed through wide crosses, and on known monosomic samples. 1. A doubled...

The tepary bean genome provides insight into evolution and domestication under heat stress

Samira Mafi Moghaddam, Atena Oladzad, Chu Shin Koh, Larissa Ramsay, John Hart, Sujan Mamidi, Genevieve Hoopes, Avinash Sreedasyam, Andrew Wiersma, Dongyan Zhao, Jane Grimwood, John P. Hamilton, Jerry Jenkins, Brieanne Vaillancourt, Joshua C. Wood, Jeremy Schmutz, Sateesh Kahale, Tiomothy Porch, Kirstin E. Bett, C. Robin Buell & Phillip E. McClean
Tepary bean (Phaseolus acutifolis A. Gray), native to the Sonoran Desert, is highly adapted to heat and drought. It is a sister species of common bean (Phaseolus vulgaris L.), the most important legume protein source for direct human consumption, and whose production is threatened by climate change. Analysis of the tepary genome revealed mechanisms for resilience to moderate heat stress and a reduced disease resistance gene repertoire, consistent with adaptation to arid, hot environments. Extensive...

Data from: A survey of invasive plants on grassland soil microbial communities and ecosystem services

Jennifer Bell, Steven Siciliano & Eric Lamb
Invasive plants can cause changes in structure and function of the ecosystem undergoing invasion. Any changes in ecosystem diversity and community composition will likely alter ecosystem services provided by that ecosystem. However, how these ecosystem services may change is poorly understood. To elucidate how these ecosystem services will change with invasion, we sampled 561 plots undergoing invasion by smooth brome (Bromus inermis) and four other invasive species at a native Rough Fescue prairie located near...

Data from: The fading of fear effects due to coral degradation is modulated by community composition

Maud Ferrari, Mark McCormick, Eric Fakan, Randall Barry & Douglas Chivers
An increasing number of coral reefs throughout the world have become degraded as a result of climate change. This degradation has resulted in a significant decline in local biodiversity. Studies have shown that some fishes (non-responders) within these altered habitats are not able to adequately access olfactory cues, specifically chemical alarm cues that are crucial in mediating predation risk. We propose that the inability to access this crucial information is a potential mechanism for increased...

A horizontally transmitted Parasitoid Killing Factor protects insects from parasitoids

Martin Erlandson, Edyta Sieminska, Cathy Coutu, Dwayne Hegedus, David Theilmann, Doug Baldwin & Stephanie Harris
Interkingdom competition occurs between hymenopteran parasitoids and insect viruses sharing the same insect hosts. It has been assumed that parasitoid larvae die with the death of infected host or as result of competition for host resources. Herein we describe a gene family, parasitoid killing factor (pkf), that encodes proteins toxic to parasitoids of the Microgastrinae group and determines parasitism success. Pkfs are found in several entomopathogenic DNA virus families and in some lepidopteran genomes. We...

Data from: Aerobic scope predicts dominance during early life in a tropical damselfish

Shaun S. Killen, Matthew D. Mitchell, Jodie L. Rummer, Douglas P. Chivers, Maud C. O. Ferrari, Mark I. McCormick & Mark G. Meekan
A range of physiological traits are linked with aggression and dominance within social hierarchies, but the role of individual aerobic capacity in facilitating aggression has seldom been studied. Further, links previously observed between an individual's metabolic rate and aggression level may be context dependent and modulated by factors such as social stress and competitor familiarity. We examined these issues in juvenile Ambon damselfish, Pomacentrus amboinensis, which display intraspecific competition for territories during settlement on coral...

Data from: Landscape connectivity predicts chronic wasting disease risk in Canada

Barry R. Nobert, Evelyn H. Merrill, Margo J. Pybus, Trent K. Bollinger & Yeen Ten Hwang
Predicting the spatial pattern of disease risk in wild animal populations is important for implementing effective control programmes. We developed a risk model predicting the probability that a deer harvested in a wild population was chronic wasting disease positive (CWD+) and evaluated the importance of landscape connectivity based on deer movements. We quantified landscape connectivity from deer ‘resistance’ to move across the landscape similar to the flow of electrical current across a hypothetical electronic circuit....

Data from: Biomarker of burden: feather corticosterone reflects energetic expenditure and allostatic overload in captive waterfowl

David W. Johns, Tracy A. Marchant, Graham D. Fairhurst, John R. Speakman & Robert G. Clark
1.Allostatic load describes the interplay between energetic demand and availability and is highly context dependent, varying between seasons and life history stages. When energy demands exceed physiological set points modulated by glucocorticoid hormones, individuals may experience allostatic overload and transition between stages in sub-optimal physiological states. 2.Corticosterone, the major glucocorticoid hormone regulating energy expenditure in birds, is incorporated into growing feathers (CORTf), and it has been suggested that CORTf reflects long-term records of allostatic load...

Data from: Northern flickers only work when they have to: how individual traits, population size and landscape disturbances affect excavation rates of an ecosystem engineer

Karen Wiebe & Karen L. Wiebe
Woodpeckers are considered ecosystem engineers because they excavate tree cavities which are used subsequently by many species of secondary cavity nesters for breeding. Woodpeckers have the choice of excavating a new hole or reusing an existing one, and this propensity to excavate (e) may affect community dynamics but has rarely been investigated. Using 18 years of data on a population of northern flickers Colaptes auratus, I tested six hypotheses to explain the propensity to excavate...

Data from: Repeat variants for the SbMATE transporter protect sorghum roots from aluminum toxicity by transcriptional interplay in cis and trans

Janaina O. Melo, Laura G. C. Martins, Beatriz A. Barros, Maiana R. Pimenta, Ubiraci G. P. Lana, Christiane E. M. Duarte, Maria M. Pastina, C. T. Guimaraes, Robert E. Schaffert, Leon V. Kochian, Elizabeth P. B. Fontes & Jurandir Vieira Magalhaes
Acidic soils, where aluminum (Al) toxicity is a major agricultural constraint, are globally widespread and are prevalent in developing countries. In sorghum, the root citrate transporter SbMATE confers Al tolerance by protecting root apices from toxic Al3+, but can exhibit reduced expression when introgressed into different lines. We show that allele-specific SbMATE transactivation occurs and is caused by factors located away from SbMATE. Using expression-QTL mapping and -GWAS, we establish that SbMATE transcription is controlled...

Data from: Differential introgression in a mosaic hybrid zone reveals candidate barrier genes

Erica L. Larson, Jose A. Andres, Steven M. Bogdanowicz & Richard G. Harrison
Hybrid zones act as genomic sieves; although globally advantageous alleles will spread throughout the zone and neutral alleles can be freely exchanged between species, introgression will be restricted for genes that contribute to reproductive barriers or local adaptation. Seminal fluid proteins (SFPs) are known to contribute to reproductive barriers in insects and have been proposed as candidate barrier genes in the hybridizing field crickets G. pennsylvanicus and G. firmus. Here, we have used 125 SNPs...

Data from: Temporal dynamics of snowmelt nutrient release from snow–plant residue mixtures: an experimental analysis and mathematical model development

Diogo Costa, Jian Liu, Jennifer Roste & Jane Elliott
Reducing eutrophication in surface water is a major environmental challenge in many countries around the world. In cold Canadian prairie agricultural regions, part of the eutrophication challenge arises during spring snowmelt when a significant portion of the total annual nutrient export occurs, and plant residues can act as a nutrient source instead of a sink. Although the total mass of nutrients released from various crop residues has been studied before, little research has been conducted...

Data from: A temporally intensive survey of bacterial communities of Brassica napus genotypes grown in three environments

Jennifer K. Bell, Steven D. Mamet, Zayda Morales Moreira, Shanay Williams, Charlotte Norris, Tanner Dowry, Zelalem M. Taye, Eric G. Lamb, Matthew Links, Steven Shirtliffe, Melissa Arcand, Sally Vail, Bobbi Helagson & Steven D. Siciliano
Soil bacterial communities play vital roles in nutrient cycling and plant health. Breeding staple crops to have more robust microbiomes may be a sustainable way to improve crop yield without increasing inputs, leading to better global food security. We collected root and rhizosphere soil samples from sixteen genotypes of canola weekly for ten weeks at one site in 2016 and at three time points across three sites in 2017. We sequenced the 16S ribosomal RNA...

Experimental variation in the spatial deposition of trace metals in feathers revealed using synchrotron x-ray fluorescence

Fardausi Akhter, Graham Fairhurst, Peter Blanchard, Karen Machin, Rob Blyth, Julie Thompson, Jamille McLeod, Renfei Feng & Catherine Soos
Feathers can be used to investigate exposure to pollution in birds because they are a secondary route for the excretion of trace elements. Evidence based on analytical imaging and spectroscopy suggests that the spatial distribution of the essential trace element zinc within feathers is related to melanin pigmentation. However, our understanding of how trace elements are deposited into growing feathers is poor and has been hampered by a lack of analytical tools to examine the...

Science to inform policy: linking population dynamics to habitat for a threatened species in Canada

Cheryl Johnson, Glenn Sutherland, Erin Neave, Mathieu Leblond, Patrick Kirby, Clara Superbie & Philip McLoughlin
Abstract 1. Boreal forests provide numerous ecological services, including the ability to store large amounts of carbon, and are of significance to global biodiversity. Increases in industrial activities in boreal landscapes since the mid-20th century have added to concerns over biodiversity loss and climate change. Boreal forests are home to dwindling populations of boreal caribou (Rangifer tarandus caribou) in Canada, a species at risk that requires large, undisturbed landscapes for persistence. In 2012, the Canadian...

Data from: Prairie dogs, cattle subsidies, and alternative prey: Seasonal and spatial variation in coyote diet in a temperate grassland

Susan Lingle, C-Jae M. Breiter, David B. Schowalter & John F. Wilmshurst
As the dominant predator on North America’s grasslands, coyotes (Canis latrans) have a large influence on biodiversity, both on working ranches and in protected parks. Ground squirrel (sciurid) species and livestock carrion are often abundant on grasslands worldwide and have the potential to influence a predator’s consumption of alternative prey. We collected 1321 scats in four seasons over two years in and adjacent to Grasslands National Park, Saskatchewan, to test the hypothesis that seasonal and...

Data from: Hybridization and adaptation to introduced balloon vines in an Australian soapberry bug

Jose A. Andrés, Prasobh R. Thampy, Michael T. Mathieson, Jenella Loye, Myron P. Zalucki, Hugh Dingle & Scott P. Carroll
Contemporary adaptation of plant feeding insects to introduced hosts provides clear cases of ecologically based population divergence. In most cases the mechanisms permitting rapid differentiation are not well known. Here we study morphological and genetic variation associated with recent shifts by the Australian soapberry bug Leptocoris tagalicus onto two naturalized Neotropical balloon vines, Cardiospermum halicacabum and C. grandiflorum that differ in time since introduction. Our results show that these vines have much larger fruits than...

Data from: Behavioral classification of low frequency acceleration and temperature data from a free ranging small mammal

Emily K. Studd, Manuelle Landry-Cuerrier, Allyson K. Menzies, Stan Boutin, Andrew G. McAdam, Jeffrey E. Lane & Murray M. Humphries
1. The miniaturization and affordability of new technology is driving a biologging revolution in wildlife ecology with use of animal-borne data logging devices. Among many new biologging technologies, accelerometers are emerging as key tools for continuously recording animal behavior. Yet a critical, but under-acknowledged consideration in biologging is the trade-off between sampling rate and sampling duration, created by battery- (or memory-) related sampling constraints. This is especially acute among small animals, causing most researchers to...

Data from: Density-dependent, central-place foraging in a grazing herbivore: competition and trade-offs in time allocation near water

David Rozen-Rechels, Floris M. Van Beest, Emmanuelle Richard, Antonio Uzal, Sarah A. Medill & Philip Dunstan McLoughlin
Optimal foraging theory addresses one of the core challenges of ecology: predicting the distribution and abundance of species. Tests of hypotheses of optimal foraging, however, often focus on a single conceptual model rather than drawing upon the collective body of theory, precluding generalization. Here we demonstrate links between two established theoretical frameworks predicting animal movements and resource use: central-place foraging and density-dependent habitat selection. Our goal is to better understand how the nature of critical,...

Causes and consequences of an unusually male-biased adult sex ratio in an unmanaged feral horse population

Charlotte Regan, Sarah Medill, Jocelyn Poissant & Philip McLoughlin
1. The adult sex ratio (ASR) is important within ecology due to its predicted effects on behaviour, demography, and evolution, but research examining the causes and consequences of ASR bias have lagged behind studies of sex ratios at earlier life stages. Although ungulate ASR is relatively well-studied, exceptions to the usual female-biased ASR challenge our understanding of the underlying drivers of biased ASR, and provide an opportunity to better understand its consequences. 2. Some feral...

Data from: The ecology of avian influenza viruses in wild dabbling ducks (Anas spp.) in Canada

Zsuzsanna Papp, Robert G. Clark, E. Jane Parmley, Frederick A. Leighton, Cheryl Waldner & Catherine Soos
Avian influenza virus (AIV) occurrence and transmission remain important wildlife and human health issues in much of the world, including in North America. Through Canada's Inter-Agency Wild Bird Influenza Survey, close to 20,000 apparently healthy, wild dabbling ducks (of seven species) were tested for AIV between 2005 and 2011. We used these data to identify and evaluate ecological and demographic correlates of infection with low pathogenic AIVs in wild dabbling ducks (Anas spp.) across Canada....

Data from: A novel alarm signal in aquatic prey: Familiar minnows coordinate group defences against predators through chemical disturbance cues

Kevin R. Bairos-Novak, Maud C. O. Ferrari & Douglas P. Chivers
Animal signalling systems outside the realm of human perception remain largely understudied. These systems consist of four main components: a signalling context, a voluntary signal, receiver responses and resulting fitness benefits to both the signaller and receiver(s). It is often most difficult to determine incidental cues from voluntary signals. One example is chemical disturbance cues released by aquatic prey during predator encounters that may serve to alert conspecifics of nearby risk and initiate tighter shoaling....

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