24 Works

Data from: Moving on with foraging theory: incorporating movement decisions into the functional response of a gregarious shorebird

Jan A. Van Gils, Matthijs Van Der Geest, Brecht De Meulenaer, Hanneke Gillis, Theunis Piersma & Eelke O. Folmer
1. Models relating intake rate to food abundance and competitor densities (generalized functional response models) can predict forager distributions and movements between patches, but we lack understanding of how distributions and small-scale movements by the foragers themselves affect intake rates. 2. Using a state-of-the-art approach based on continuous-time Markov chain dynamics, we add realism to classic functional response models by acknowledging that the chances to encounter food and competitors are influenced by movement decisions, and,...

Data from: Behavioural isolation may facilitate homoploid hybrid speciation in cichlid fish

Oliver M. Selz, Rahel Thommen, Martine E. Maan & Ole Seehausen
Hybrid speciation is constrained by the homogenizing effects of gene flow from the parental species. In the absence of post-mating isolation due to structural changes in the genome, or temporal or spatial premating isolation, another form of reproductive isolation would be needed for homoploid hybrid speciation to occur. Here, we investigate the potential of behavioural mate choice to generate assortative mating among hybrids and parental species. We made three-first-generation hybrid crosses between different species of...

Data from: Reference data for the Ruff Figural Fluency Test stratified by age and educational level

Gerbrand J. Izaks, Hanneke Joosten, Janneke Koerts, Ron T. Gansevoort & Joris P. Slaets
The Ruff Figural Fluency Test (RFFT) was developed to avoid the difficulties that were encountered in earlier tests of figural fluency. Although the test characteristics of the RFFT seem to be good and it is a valuable addition to neuropsychological assessments, reference data are still scarce. To this aim, we required 2,404 community dwelling persons in Groningen, The Netherlands to perform the RFFT. All 1,651 persons with a complete RFFT and known educational level formed...

Data from: Baseline immune activity is associated with date rather than with moult stage in the Arctic-breeding barnacle goose (Branta leucopsis)

Cecilia A. M. Sandström, Jouke Prop, H Van Der Jeugd & Maarten J. J. E. Loonen
Variation in immune defence in birds is often explained either by external factors such as food availability and disease pressure or by internal factors such as moult and reproductive effort. We explored these factors together in one sampling design by measuring immune activity over the time frame of the moulting period of Arctic-breeding barnacle geese (Branta leucopsis). We assessed baseline innate immunity by measuring levels of complement-mediated lysis and natural antibody-mediated agglutination together with total...

Data from: The impact of translocations on neutral and functional genetic diversity within and among populations of the Seychelles warbler

David J. Wright, Lewis G. Spurgin, Nigel J. Collar, Jan Komdeur, Terry Burke & David S. Richardson
Translocations are an increasingly common tool in conservation. The maintenance of genetic diversity through translocation is critical for both the short and long term persistence of populations and species. However, the relative spatio-temporal impacts of translocations on neutral and functional genetic diversity and how this affects genetic structure among the conserved populations overall has received little investigation. We compared the impact of translocating different numbers of founders on both microsatellite and major histocompatibility complex (MHC)...

Data from: Mediation analysis demonstrates that trans-eQTLs are often explained by cis-mediation: a genome-wide analysis among 1,800 South Asians

Brandon L. Pierce, Lin Tong, Lin S. Chen, Ronald Rahaman, Maria Argos, Farzana Jasmine, Shantanu Roy, Rachelle Paul-Brutus, Harm-Jan Westra, Lude Franke, Tonu Esko, Rakibuz Zaman, Tariqul Islam, Mahfuzar Rahman, John A. Baron, Muhammad G. Kibriya & Habibul Ahsan
A large fraction of human genes are regulated by genetic variation near the transcribed sequence (cis-eQTL, expression quantitative trait locus), and many cis-eQTLs have implications for human disease. Less is known regarding the effects of genetic variation on expression of distant genes (trans-eQTLs) and their biological mechanisms. In this work, we use genome-wide data on SNPs and array-based expression measures from mononuclear cells obtained from a population-based cohort of 1,799 Bangladeshi individuals to characterize cis-...

Data from: Ecological opportunities and specializations shaped genetic divergence in a highly mobile marine top predator

Marie Louis, Michael C. Fontaine, Jérôme Spitz, Erika Schlund, Willy Dabin, Robert Deaville, Florence Caurant, Yves Cherel, Christophe Guinet & Benoit Simon-Bouhet
Environmental conditions can shape genetic and morphological divergence. Release of new habitats during historical environmental changes was a major driver of evolutionary diversification. Here, forces shaping population structure and ecotype differentiation (‘pelagic’ and ‘coastal’) of bottlenose dolphins in the North-east Atlantic were investigated using complementary evolutionary and ecological approaches. Inference of population demographic history using approximate Bayesian computation indicated that coastal populations were likely founded by the Atlantic pelagic population after the Last Glacial Maxima...

Data from: Estimating the duration of speciation from phylogenies

Rampal S. Etienne, Hélène Morlon & Amaury Lambert
Speciation is not instantaneous but takes time. The protracted birth-death diversification model incorporates this fact and predicts the often observed slowdown of lineage accumulation towards the present. The mathematical complexity of the protracted speciation model has barred estimation of its parameters until recently a method to compute the likelihood of phylogenetic branching times under this model was outlined (Lambert et al. 2014). Here we implement this method and study using simulated phylogenies of extant species...

Data from: Identifying the African wintering grounds of hybrid flycatchers using a multi–isotope (δ2H, δ13C, δ15N) assignment approach

Thor Veen, Mårten B. Hjernquist, Steven L. Van Wilgenburg, Keith A. Hobson, Eelke Folmer, Laura Font & Marcel Klaassen
Migratory routes and wintering grounds can have important fitness consequences, which can lead to divergent selection on populations or taxa differing in their migratory itinerary. Collared (Ficedula albicollis) and pied (F. hypoleuca) flycatchers breeding in Europe and wintering in different sub-Saharan regions have distinct migratory routes on the eastern and western sides of the Sahara desert, respectively. In an earlier paper, we showed that hybrids of the two species did not incur reduced winter survival,...

Data from: Hyper-Theory-of-Mind in children with psychotic experiences

Lars Clemmensen, Jim Van Os, Anne Mette Skovgaard, Mette Væver, Els M. A. Blijd-Hoogewys, Agna A. Bartels-Velthuis & Pia Jeppesen
Background: Alterations in Theory-of-Mind (ToM) are associated with psychotic disorder. In addition, studies in children have documented that alterations in ToM are associated with Psychotic Experiences (PE). Our aim was to examine associations between an exaggerated type of ToM (HyperToM) and PE in children. Children with this type of alteration in ToM infer mental states when none are obviously suggested, and predict behaviour on the basis of these erroneous beliefs. Individuals with HyperToM do not...

Data from: Neighbouring-group composition and within-group relatedness drive extra-group paternity rate in the European badger (Meles meles)

Geetha Annavi, Chris Newman, Hannah L. Dugdale, Christina C. Buesching, Yung W. Sin, Terry Burke & David W. Macdonald
Extra-group paternity (EGP) occurs commonly among group-living mammals and plays an important role in mating systems and the dynamics of sexual selection; however, socio-ecological and genetic correlates of EGP have been underexplored. We use 23 years of demographic and genetic data from a high-density European badger (Meles meles) population, to investigate the relationship between the rate of EGP in litters and mate availability, mate incompatibility and mate quality (heterozygosity). Relatedness between within-group assigned mothers and...

Data from: Dispersal and the transition to sympatry in vertebrates

Alex L. Pigot & Joseph A. Tobias
Under allopatric speciation models, a key step in the build-up of species richness is population dispersal leading to the co-occurrence of previously geographically isolated forms. Despite its central importance for community assembly, the extent to which the transition from spatial segregation (allopatry or parapatry) to coexistence (sympatry) is a predictable process, or alternatively one governed by chance and the vagaries of biogeographic history, remains poorly understood. Here, we use estimated divergence times and current patterns...

Data from: Genetic and phenotypic divergence in an island bird: isolation by distance, by colonisation or by adaptation?

Lewis G. Spurgin, Juan Carlos Illera, Tove H. Jorgensen, Deborah A. Dawson & David S. Richardson
Discerning the relative roles of adaptive and non-adaptive processes in generating differences among populations and species, as well as how these processes interact, are fundamental aims in biology. Both genetic and phenotypic divergence across populations can be the product of limited dispersal and gradual genetic drift across populations (isolation by distance), of colonisation history and founder effects (isolation by colonisation) or of adaptation to different environments preventing migration between populations (isolation by adaptation). Here we...

Data from: Heterozygosity–fitness correlations in a wild mammal population: accounting for parental and environmental effects

Geetha Annavi, Chris Newman, Christina D. Buesching, David W. Macdonald, Terry Burke, Hannah L. Dugdale & Christopher Newman
HFCs (heterozygosity–fitness correlations) measure the direct relationship between an individual's genetic diversity and fitness. The effects of parental heterozygosity and the environment on HFCs are currently under-researched. We investigated these in a high-density U.K. population of European badgers (Meles meles), using a multimodel capture–mark–recapture framework and 35 microsatellite loci. We detected interannual variation in first-year, but not adult, survival probability. Adult females had higher annual survival probabilities than adult males. Cubs with more heterozygous fathers...

Data from: Performance and agreement of risk stratification instruments for postoperative delirium in persons aged 50 years or older

Carolien J. Jansen, Anthony R. Absalom, Geertruida H. De Bock, Barbara L. Van Leeuwen & Gerbrand J. Izaks
Several risk stratification instruments for postoperative delirium in older people have been developed because early interventions may prevent delirium. We investigated the performance and agreement of nine commonly used risk stratification instruments in an independent validation cohort of consecutive elective and emergency surgical patients aged ≥50 years with ≥1 risk factor for postoperative delirium. Data was collected prospectively. Delirium was diagnosed according to DSM-IV-TR criteria. The observed incidence of postoperative delirium was calculated per risk...

Data from: Sex-specific winter distribution in a sexually dimorphic shorebird is explained by resource partitioning

Sjoerd Duijns, Jan A. Van Gils, Bernard Spaans, Job Ten Horn, Maarten Brugge & Theunis Piersma
Sexual size dimorphism (SSD) implies correlated differences in energetic requirements and feeding opportunities, such that sexes will face different trade-offs in habitat selection. In seasonal migrants, this could result in a differential spatial distribution across the wintering range. To identify the ecological causes of sexual spatial segregation, we studied a sexually dimorphic shorebird, the bar-tailed godwit Limosa lapponica, in which females have a larger body and a longer bill than males. With respect to the...

Data from: Pathogen burden, co-infection and major histocompatibility complex variability in the European badger (Meles meles)

Yung Wa Sin, Geetha Annavi, Hannah L. Dugdale, Chris Newman, Terry Burke & David W. Macdonald
Pathogen-mediated selection is thought to maintain the extreme diversity in the major histocompatibility complex (MHC) genes, operating through the heterozygote advantage, rare-allele advantage and fluctuating selection mechanisms. Heterozygote advantage (i.e., recognizing and binding a wider range of antigens than homozygotes) is expected to be more detectable when multiple pathogens are considered simultaneously. Here, we test if MHC diversity in a wild population of European badgers (Meles meles) is driven by pathogen-mediated selection. We examined individual...

Data from: A novel mechanism for grazing lawn formation: large herbivore-induced modification of the plant-soil water balance

Michiel P. Veldhuis, Ruth A. Howison, Rienk W. Fokkema, Elske Tielens & Han Olff
1. Large herbivores play a key-role in creating spatial heterogeneity through the formation of grazing lawns. Recent research suggests that the currently accepted nutrient-based theory on the formation of these grazing lawns cannot universally explain their formation in all ecosystems where they are found. 2. We developed and investigated an alternative hypothesis on grazing lawn formation and maintenance based on herbivore effects on the plant-soil water balance. We propose that large herbivores change the soil...

Data from: The combined effects of body weight support and gait speed on gait related muscle activity: a comparison between walking in the Lokomat exoskeleton and regular treadmill walking

Klaske Van Kammen, Annemarijke Boonstra, Heleen Reinders-Messelink & Rob Den Otter
Background: For the development of specialized training protocols for robot assisted gait training, it is important to understand how the use of exoskeletons alters locomotor task demands, and how the nature and magnitude of these changes depend on training parameters. Therefore, the present study assessed the combined effects of gait speed and body weight support (BWS) on muscle activity, and compared these between treadmill walking and walking in the Lokomat exoskeleton. Methods: Ten healthy participants...

Data from: Genetics of decayed sexual traits in a parasitoid wasp with endosymbiont-induced asexuality

Wen-Juan Ma, Bart A. Pannebakker, Leo W. Beukeboom, Tanja Schwander & Louis Van De Zande
Trait decay may occur when selective pressures shift, owing to changes in environment or life style, rendering formerly adaptive traits non-functional or even maladaptive. It remains largely unknown if such decay would stem from multiple mutations with small effects or rather involve few loci with major phenotypic effects. Here, we investigate the decay of female sexual traits, and the genetic causes thereof, in a transition from haplodiploid sexual reproduction to endosymbiont-induced asexual reproduction in the...

Data from: Museum DNA reveals the demographic history of the endangered Seychelles warbler

Lewis G. Spurgin, David J. Wright, Nigel J. Collar, Marco Van Der Velde, Jan Komdeur, Terry Burke & David S. Richardson
The importance of evolutionary conservation – how understanding evolutionary forces can help guide conservation decisions – is widely recognized. However, the historical demography of many endangered species is unknown, despite the fact that this can have important implications for contemporary ecological processes and for extinction risk. Here, we reconstruct the population history of the Seychelles warbler (Acrocephalus sechellensis) – an ecological model species. By the 1960s, this species was on the brink of extinction, but...

Data from: Field measurements give biased estimates of functional response parameters, but help explain foraging distributions

Sjoerd Duijns, Ineke E. Knot, Theunis Piersma & Jan A. Van Gils
1. Mechanistic insights and predictive understanding of the spatial distributions of foragers are typically derived by fitting either field measurements on intake rates and food abundance, or observations from controlled experiments, to functional response models. It has remained unclear, however, whether and why one approach should be favoured above the other, as direct comparative studies are rare. 2. The field measurements required to parameterize either single or multi-species functional response models are relatively easy to...

Data from: Statin use and cognitive function: population-based observational study with long-term follow-up

Hanneke Joosten, Sipke T. Visser, Marlise E. Van Eersel, Ron T. Gansevoort, Henk J. Bilo, Joris P. Slaets, Gerbrand J. Izaks & Henk J. G. Bilo
We aimed to evaluate the association between statin use and cognitive function. Cognitive function was measured with the Ruff Figural Fluency Test (RFFT; worst score, 0; best score, 175 points) and the Visual Association Test (VAT; low performance, 0–10; high performance, 11–12 points) in an observational study that included 4,095 community-dwelling participants aged 35–82 years. Data on statin use were obtained from a computerized pharmacy database. Analysis were done for the total cohort and subsamples...

Data from: The cost of migration: spoonbills suffer higher mortality during trans-Saharan spring migrations only

Tamar Lok, Otto Overdijk & Theunis Piersma
Explanations for the wide variety of seasonal migration patterns of animals all carry the assumption that migration is costly and that this cost increases with migration distance. Although in some studies, the relationships between migration distance and breeding success or annual survival are established, none has investigated whether mortality during the actual migration increases with migration distance. Here, we compared seasonal survival between Eurasian spoonbills (Platalea leucorodia leucorodia) that breed in The Netherlands and migrate...

Registration Year

  • 2014
    24

Resource Types

  • Dataset
    24

Affiliations

  • University of Groningen
    24
  • University of Sheffield
    6
  • University Medical Center Groningen
    5
  • Royal Netherlands Institute for Sea Research
    4
  • University of Oxford
    4
  • University of East Anglia
    3
  • Harvard University
    2
  • VU University Amsterdam
    1
  • University of North Carolina
    1
  • Nederlands Instituut voor Ecologie
    1