3 Works

Data from: Fluidigm2PURC: automated processing and haplotype inference for double-barcoded PCR amplicons

Paul D. Blischak, Maribeth Latvis, Diego F. Morales-Briones, Jens C. Johnson, Verónica S. Di Stilio, Andrea D. Wolfe & David C. Tank
Premise of the Study: Targeted enrichment strategies for phylogenomic inference are a time‐ and cost‐efficient way to collect DNA sequence data for large numbers of individuals at multiple, independent loci. Automated and reproducible processing of these data is a crucial step for researchers conducting phylogenetic studies. Methods and Results: We present Fluidigm2PURC, an open source Python utility for processing paired‐end Illumina data from double‐barcoded PCR amplicons. In combination with the program PURC (Pipeline for Untangling...

Data from: Evaluating effective population size and genetic diversity of a declining kit fox population using contemporary and historical specimens

Robert C. Lonsinger, Jennifer R. Adams & Lisette P. Waits
Loss of genetic diversity has serious conservation consequences (e.g., loss of adaptive potential, reduced population viability), but is difficult to evaluate without developing long-term, multigenerational datasets. Alternatively, historical samples can provide insights into changes in genetic diversity and effective population size (Ne). Kit foxes (Vulpes macrotis) are a species of conservation concern across much of their range. In western Utah, kit fox abundance has declined precipitously from historical levels, causing concern about population persistence. We...

Data from: Evaluation of potential overwinter mortality of age-0 walleye and appropriate age-1 sampling gear

Jeffrey D. Grote, Melissa R. Wuellner, Brian G. Blackwell & David O. Lucchesi
Potential recruitment of age-0 Walleye Sander vitreus to adults is often indexed by the relative abundance of age-0 individuals during their first summer or fall. However, relationships between age-0 and adult Walleye abundance are often weak or nonsignificant in many waters. Overwinter mortality during the first year of life has been hypothesized as an important limitation to Walleye recruitment in lakes, but limited evidence of such mortality exists, likely due to difficulties in sampling age-1...

Registration Year

  • 2018
    3

Resource Types

  • Dataset
    3

Affiliations

  • South Dakota State University
    3
  • University of Idaho
    2
  • University of Washington
    1
  • The Ohio State University
    1
  • University of Minnesota
    1
  • California Department of Fish and Wildlife
    1