11 Works

Data from: paco: implementing Procrustean Approach to Cophylogeny in R

Matthew C. Hutchinson, Edgar Fernando Cagua, Juan A. Balbuena, Daniel B. Stouffer & Timothée Poisot
1. The concordance of evolutionary histories and extant species interactions provides a useful metric for addressing questions of how the structure of ecological communities is influenced by macro-evolutionary processes. 2. We introduce paco (v.0.3.1), an R package to perform Procrustean Approach to Cophylogeny. This method assesses the phylogenetic congruence, or evolutionary dependence, of two groups of interacting species using both ecological interaction networks and their phylogenetic history. 3. We demonstrate the functionality of paco through...

Data from: Ecological selection of siderophore-producing microbial taxa in response to heavy metal contamination

Elze Hesse, Siobhan O'Brien, Nicolas Tromas, Florian Bayer, Adela M. Lujan, Eleanor M. Van Veen, Dave J. Hodgson & Angus Buckling
Some microbial public goods can provide both individual and community-wide benefits, and are open to exploitation by non-producing species. One such example is the production of metal-detoxifying siderophores. Here, we investigate whether conflicting selection pressures on siderophore production by heavy metals – a detoxifying effect of siderophores, and exploitation of this detoxifying effect – results in a net increase or decrease. We show that the proportion of siderophore-producing taxa increases along a natural heavy metal...

Data from: A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny

, Anne Bruneau, Nasim Azani, Marielle Babineau, Edeline Gagnon, Carole Sinou, Royce Steeves, Erin Zimmerman, C. Donovan Bailey, Lynsey Kovar, Madhugiri Nageswara-Rao, Hannah Banks, RuthP. Clark, Manuel De La Estrella, Peter Gasson, GeoffreyC. Kite, BenteB. Klitgaard, GwilymP. Lewis, Danilo Neves, Gerhard Prenner, María De Lourdes Rico-Arce, ArianeR. Barbosa, Maria Cristina López-Roberts, Luciano Paganucci De Queiroz, PétalaG. Ribeiro … & Tingshuang Yi
The classification of the legume family proposed here addresses the long-known non-monophyly of the traditionally recognised subfamily Caesalpinioideae, by recognising six robustly supported monophyletic subfamilies. This new classification uses as its framework the most comprehensive phylogenetic analyses of legumes to date, based on plastid matK gene sequences, and including near-complete sampling of genera (698 of the currently recognised 765 genera) and ca. 20% (3696) of known species. The matK gene region has been the most...

Data from: Plant-soil feedback and the maintenance of diversity in Mediterranean-climate shrublands

Francois P. Teste, Paul Kardol, Benjamin L. Turner, David A. Wardle, Graham Zemunik, Michael Renton & Etienne Laliberté
Soil biota influence plant performance through plant-soil feedback, but it is unclear whether the strength of such feedback depends on plant traits and whether plant-soil feedback drives local plant diversity. We grew 16 co-occurring plant species with contrasting nutrient-acquisition strategies from hyperdiverse Australian shrublands and exposed them to soil biota from under their own or other plant species. Plant responses to soil biota varied according to their nutrient-acquisition strategy, including positive feedback for ectomycorrhizal plants...

Data from: Interaction between the oculomotor and postural systems during a dual-task: compensatory reductions in head sway following visually-induced postural perturbations promote the production of accurate double-step saccades in standing human adults

Mathieu Boulanger, Guillaume Giraudet & Jocelyn Faubert
Humans routinely scan their environment for useful information using saccadic eye movements and/or coordinated movements of the eyes and other body segments such the head and the torso. Most previous eye movement studies were conducted with seated subject and showed that single saccades and sequences of saccades (e.g. double-step saccades) made to briefly flashed stimuli were equally accurate and precise. As one can easily appreciate, most gaze shifts performed daily by a given person are...

Data from: Network structure and local adaptation in coevolving bacteria-phage interactions

James Gurney, Lafi Aldakak, Alex Betts, Claire Gougat-Barbera, Timothée Poisot, Oliver Kaltz & Michael E. Hochberg
Numerous theoretical and experimental studies have investigated antagonistic coevolution between parasites and their hosts. Although experimental tests of theory from a range of biological systems are largely concordant regarding the influence of several driving processes, we know little as to how mechanisms acting at the smallest scales (individual molecular and phenotypic changes) may result in the emergence of structures at larger scales, such as coevolutionary dynamics and local adaptation. We capitalized on methods commonly employed...

Data from: Increasing procaspase 8 expression using repurposed drugs to induce HIV infected cell death in ex vivo patient cells

Rahul Sampath, Nathan W. Cummins, Sekar Natesampillai, Gary D. Bren, Thomas D. Chung, Jason Baker, Keith Henry, Amelie Pagliuzza & Andrew D. Badley
HIV persists because a reservoir of latently infected CD4 T cells do not express viral proteins and are indistinguishable from uninfected cells. One approach to HIV cure suggests that reactivating HIV will activate cytotoxic pathways; yet when tested in vivo, reactivating cells do not die sufficiently to reduce cell-associated HIV DNA levels. We recently showed that following reactivation from latency, HIV infected cells generate the HIV specific cytotoxic protein Casp8p41 which is produced by HIV...

Data from: Greater pollination generalization is not associated with reduced constraints on corolla shape in Antillean plants

Simon Joly, François Lambert, Hermine Alexandre, Julien Clavel, Étienne Léveillé-Bourret & John L. Clark
Flowers show important structural variation as reproductive organs but the evolutionary forces underlying this diversity are still poorly understood. In animal-pollinated species, flower shape is strongly fashioned by selection imposed by pollinators, which is expected to vary according to guilds of effective pollinators. Using the Antillean subtribe Gesneriinae (Gesneriaceae), we tested the hypothesis that pollination specialists pollinated by one functional type of pollinator have maintained more similar corolla shapes through time due to more constant...

Data from: Greater root phosphatase activity in nitrogen-fixing rhizobial but not actinorhizal plants with declining phosphorus availability

Guochen Kenny Png, Benjamin L. Turner, Felipe E. Albornoz, Patrick E. Hayes, Hans Lambers & Etienne Laliberté
1. The abundance of nitrogen (N)-fixing plants in ecosystems where phosphorus (P) limits plant productivity poses a paradox because N fixation entails a high P cost. One explanation for this paradox is that the N-fixing strategy allows greater root phosphatase activity to enhance P acquisition from organic sources, but evidence to support this contention is limited. 2. We measured root phosphomonoesterase (PME) activity of 10 N-fixing species, including rhizobial legumes and actinorhizal Allocasuarina species, and...

Data from: Paternity analysis of wood turtles (Glyptemys insculpta) reveals complex mating patterns

Cindy Bouchard, Nathalie Tessier & François-Joseph Lapointe
Mating system characteristics are of great importance as they may influence male and female reproductive success and reproductive isolation. The wood turtle (Glyptemys insculpta) is a terrestrial freshwater species listed as endangered by the International Union for Conservation of Nature. Considering its conservation status and the paucity of information currently available on parentage relationship for the species, we performed a microsatellite analysis to study the mating system of wood turtles in the Shawinigan River (Québec)....

Data from: Bringing multivariate support to multiscale codependence analysis: assessing the drivers of community structure across spatial scales

Guillaume Guénard & Pierre Legendre
1. Multiscale codependence analysis (MCA) quantifies the joint spatial distribution of a pair of variables in order to provide a spatially-explicit assessment of their relationships to one another. For the sake of simplicity, the original definition of MCA only considered a single response variable (e.g. a single species). However, that definition would limit the application of MCA when many response variables are studied jointly, for example when one wants to study the effect of the...

Registration Year

  • 2017

Resource Types

  • Dataset


  • University of Montreal
  • Smithsonian Tropical Research Institute
  • University of Western Australia
  • Universidade Federal de Goiás
  • Sao Paulo State University
  • University of the Western Cape
  • New Mexico State University
  • Princeton University
  • Kyushu University
  • Federal University of São Carlos