14 Works

Data from: Seasonal changes in plankton food web structure and carbon dioxide flux from Southern California reservoirs

Emily M. Adamczyk & Jonathan B. Shurin
Reservoirs around the world contribute to cycling of carbon dioxide (CO2) with the atmosphere, but there is little information on how ecosystem processes determine the absorption or emission of CO2. Reservoirs are the most prevalent freshwater systems in the arid southwest of North America, yet it is unclear whether they sequester or release CO2 and therefore how water impoundment impacts global carbon cycling. We sampled three reservoirs in San Diego, California, weekly for one year....

Data from: Ear mite removal in the Santa Catalina Island fox (Urocyon littoralis catalinae): controlling risk factors for cancer development

Megan E. Moriarty, T. Winston Vickers, Deana L. Clifford, David K. Garcelon, Patricia M. Gaffney, Kenneth W. Lee, Julie L. King, Calvin L. Duncan & Walter M. Boyce
Ear mites (Otodectes cynotis) and ear canal tumors are highly prevalent among federally endangered Island foxes (Urocyon littoralis catalinae) living on Santa Catalina Island off the coast of Southern California. Since studies began in the 1990s, nearly all foxes examined were found to be infected with ear mites, and ceruminous gland tumors (carcinomas and adenomas) were detected in approximately half of all foxes ≥ 4 years of age. We hypothesized that reduction of ear mite...

Data from: Towards automated annotation of benthic survey images: variability of human experts and operational modes of automation

Oscar Beijbom, Peter J. Edmunds, Chris Roelfsema, Jennifer Smith, David I. Kline, Benjamin Neal, Matthew J. Dunlap, Vincent Moriarty, Tung-Yung Fan, Chih-Jui Tan, Stephen Chan, Tali Treibitz, Anthony Gamst, B. Greg Mitchell, David Kriegman & Benjamin P. Neal
Global climate change and other anthropogenic stressors have heightened the need to rapidly characterize ecological changes in marine benthic communities across large scales. Digital photography enables rapid collection of survey images to meet this need, but the subsequent image annotation is typically a time consuming, manual task. We investigated the feasibility of using automated point-annotation to expedite cover estimation of the 17 dominant benthic categories from survey-images captured at four Pacific coral reefs. Inter- and...

Data from: Frost sensitivity of leaves and flowers of subalpine plants is related to tissue type and phenology

Paul J. CaraDonna & Justin A. Bain
Harsh abiotic conditions–such as low temperatures that lead to spring and summer frost events in high-elevation and high-latitude ecosystems–can have strong negative consequences for plant growth, survival, and reproduction. Despite the predicted increase in episodic frost events under continued climate change in some ecosystems, our general understanding of the factors associated with frost sensitivity of reproductive and vegetative plant structures in natural plant communities is limited. The timing of growth and reproduction may be an...

Data from: Monitoring spawning activity in a southern California marine protected area using molecular identification of fish eggs

Alice E. Harada, Elise A. Lindgren, Maiko C. Hermsmeier, Peter A. Rogowski, Eric Terrill & Ronald S. Burton
In order to protect the diverse ecosystems of coastal California, a series of marine protected areas (MPAs) have been established. The ability of these MPAs to preserve and potentially enhance marine resources can only be assessed if these habitats are monitored through time. This study establishes a baseline for monitoring the spawning activity of fish in the MPAs adjacent to Scripps Institution of Oceanography (La Jolla, CA, USA) by sampling fish eggs from the plankton....

Data from: Olfaction contributes to pelagic navigation in a coastal shark

Andrew P. Nosal, Yi Chao, John D. Farrara, Fei Chai & Philip A. Hastings
How animals navigate the constantly moving and visually uniform pelagic realm, often along straight paths between distant sites, is an enduring mystery. The mechanisms enabling pelagic navigation in cartilaginous fishes are particularly understudied. We used shoreward navigation by leopard sharks (Triakis semifasciata) as a model system to test whether olfaction contributes to pelagic navigation. Leopard sharks were captured alongshore, transported 9 km offshore, released, and acoustically tracked for approximately 4 h each until the transmitter...

Data from: Expanding the described metabolome of the marine cyanobacterium Moorea producens JHB through orthogonal natural products workflows

Paul D. Boudreau, Emily A. Monroe, Suneet Mehrotra, Shane Desfor, Anton Korobeynikov, David H. Sherman, Thomas F. Murray, Lena Gerwick, Pieter C. Dorrestein & William H. Gerwick
Moorea producens JHB, a Jamaican strain of tropical filamentous marine cyanobacteria, has been extensively studied by traditional natural products techniques. These previous bioassay and structure guided isolations led to the discovery of two exciting classes of natural products, hectochlorin (1) and jamaicamides A (2) and B (3). In the current study, mass spectrometry-based ‘molecular networking’ was used to visualize the metabolome of Moorea producens JHB, and both guided and enhanced the isolation workflow, revealing additional...

Data from: Pathology and epidemiology of ceruminous gland tumors among endangered Santa Catalina Island foxes (Urocyon littoralis catalinae) in the Channel Islands, USA

T. Winston Vickers, Deana L. Clifford, David K. Garcelon, Julie L. King, Calvin L. Duncan, Patricia M. Gaffney & Walter M. Boyce
In this study, we examined the prevalence, pathology, and epidemiology of tumors in free-ranging island foxes occurring on three islands in the California Channel Islands, USA. We found a remarkably high prevalence of ceruminous gland tumors in endangered foxes (Urocyon littoralis catalinae) occurring on Santa Catalina Island (SCA) - 48.9% of the dead foxes examined from 2001-2008 had tumors in their ears, and tumors were found in 52.2% of randomly-selected mature (≥ 4 years) foxes...

Data from: High-arctic butterflies become smaller with rising temperatures

Joseph J. Bowden, Anne Eskildsen, Rikke R. Hansen, Kent Olsen, Carolyn M. Kurle & Toke Høye
The response of body size to increasing temperature constitutes a universal response to climate change that could strongly affect terrestrial ectotherms, but the magnitude and direction of such responses remain unknown in most species. The metabolic cost of increased temperature could reduce body size but long growing seasons could also increase body size as was recently shown in an Arctic spider species. Here, we present the longest known time series on body size variation in...

Data from: Vocal turn-taking in a nonhuman primate is learned during ontogeny

Cecilia P. Chow, Jude F. Mitchell & Cory T. Miller
Conversational turn-taking is an integral part of language development, as it reflects a confluence of social factors that mitigate communication. Humans coordinate the timing of speech based on the behaviour of another speaker, a behaviour that is learned during infancy. While adults in several primate species engage in vocal turn-taking, the degree to which similar learning processes underlie its development in these non-human species or are unique to language is not clear. We recorded the...

Data from: Performance of social network sensors during Hurricane Sandy

Yury Kryvasheyeu, Haohui Chen, Esteban Moro, Pascal Van Hentenryck & Manuel Cebrian
Information flow during catastrophic events is a critical aspect of disaster management. Modern communication platforms, in particular online social networks, provide an opportunity to study such flow and derive early-warning sensors, thus improving emergency preparedness and response. Performance of the social networks sensor method, based on topological and behavioral properties derived from the “friendship paradox”, is studied here for over 50 million Twitter messages posted before, during, and after Hurricane Sandy. We find that differences...

Data from: The influence of depression on cognitive control: disambiguating approach and avoidance tendencies

He Huang, Javier Movellan, Martin P. Paulus & Katia M. Harlé
Dysfunctions of approach and avoidance motivation play an important role in depression, which in turn may affect cognitive control, i.e., the ability to regulate thoughts and action to achieve internal goals. We use a novel experimental paradigm, i.e. a computer simulated driving-task, to study the impact of depression on cognitive control by measuring approach and avoidance actions in continuous time. In this task, 39 subjects with minimal to severe depression symptoms were instructed to use...

Data from: Nosema ceranae can infect honey bee larvae and reduces subsequent adult longevity

Daren M. Eiri, Guntima Suwannapong, Matthew Endler & James C. Nieh
Nosema ceranae causes a widespread disease that reduces honey bee health but is only thought to infect adult honey bees, not larvae, a critical life stage. We reared honey bee (Apis mellifera) larvae in vitro and provide the first demonstration that N. ceranae can infect larvae and decrease subsequent adult longevity. We exposed three-day-old larvae to a single dose of 40,000 (40K), 10,000 (10K), zero (control), or 40K autoclaved (control) N. ceranae spores in larval...

Data from: Testing the effects of ant invasions on non-ant arthropods with high-resolution taxonomic data

Cause Hanna, Ida Naughton, Christina Boser & David Holway
Invasions give rise to a wide range of ecological effects. Many invasions proceed without noticeable impacts on the resident biota, whereas others shift species composition and even alter ecosystem function. Ant invasions generate a broad spectrum of ecological effects, but controversy surrounds the extent of these impacts, especially with regard to how other arthropods are affected. This uncertainty in part results from the widespread use of low-resolution taxonomic data, which can mask the presence of...

Registration Year

  • 2015

Resource Types

  • Dataset


  • University of California, San Diego
  • Aarhus University
  • California Department of Fish and Wildlife
  • University of California, Davis
  • California State University, Northridge
  • University of Michigan-Ann Arbor
  • William Paterson University
  • University of California System
  • University of Queensland
  • Johns Hopkins University