32 Works

Additional file 1 of Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Additional file 1: Table S1. The disease rates of the five varieties after inoculating RBSDV.

Additional file 3 of Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Additional file 3: Table S2. The CDSs of ZmABCB family.

Additional file 4 of Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Additional file 4: Table S3. The primer sequences for the qRT-PCR.

Additional file 1 of Construction and analysis of sample-specific driver modules for breast cancer

Yuanyuan Chen, Haitao Li & Xiao Sun
Additional file 1: Supplementary Figure S1. The identified aberrantly methylated genes for each sample. Supplementary Figure S2. The boxplot of gene mutation frequency and gene methylation aberration frequency. Supplementary Figure S3. Sample-specific methylation aberration driver modules characterize personalized features and also reveal common network patterns for breast cancer samples. Supplementary Figure S4. The number of mutation genes and aberrantly methylated genes of each breast cancer sample among different subtypes. Supplementary Table S1. Pairwise comparisons for...

Decoupled dust deposition and ocean productivity in the Antarctic Zone of the Southern Ocean over the past 1.5 million years

Michael E. Weber , Ian Bailey , Sidney R. Hemming , Yasmina M. Martos , Brendan T. Reilly , Thomas A. Ronge , Stefanie Brachfeld , Trevor Williams , Maureen Raymo , Simon T. Belt , Hendrik Vogel , Victoria Peck , Linda Armbrecht , Alix Cage , Fabricio G. Cardillo , Zhiheng Du , Gerson Fauth , Christopher J. Fogwill , Marga Garcia , Marlo Garnsworthy , Anna Glüder , Michelle Guitard , Marcus Gutjahr , Iván Hernández-Almeida , Frida S. Hoem … & Xufeng Zheng
Southern Ocean paleoceanography provides key insights into how iron fertilization and oceanic productivity developed through Pleistocene ice-ages and their role in influencing the carbon cycle. We report the first high-resolution record of dust deposition and ocean productivity for the Antarctic Zone, close to the main dust source, Patagonia. Our deep-ocean records cover the last 1.5 Ma, thus doubling that from Antarctic ice-cores. We find a ≥10-fold increase in dust deposition during glacials and a ≤5-fold...

Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Abstract Background Maize rough dwarf disease (MRDD), caused by rice black-streaked dwarf virus (RBSDV) belonging to the Fijivirus genus, seriously threatens maize production worldwide. Three susceptible varieties (Ye478, Zheng 58, and Zhengdan 958) and two resistant varieties (P138 and Chang7–2) were used in our study. Results A set of ATP-binding cassette subfamily B (ABCB) transporter genes were screened to evaluate their possible involvements in RBSDV resistance. In the present study, ZmABCB15, an ABCB transporter family...

Additional file 1 of Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Additional file 1: Table S1. The disease rates of the five varieties after inoculating RBSDV.

Pyroptosis regulators exert crucial functions in prognosis, progression and immune microenvironment of pancreatic adenocarcinoma: a bioinformatic and in vitro research

Zhenghai Bai, Fangshi Xu, Xiaodan Feng, Yuan Wu, Junhua Lv, Yu Shi & Honghong Pei
Pyroptosis is an inflammatory programmed cell death, showing potentials to be a novel anti-cancer approach. However, the roles of pyroptosis-related (PR) genes (PRGs) in pancreatic adenocarcinoma (PAAD) remain elusive. In the present study, we constructed a novel PR risk signature through the lasso regression analysis. The risk signature was greatly conducive to PAAD prognostic assessment. PR risk score was identified as an independent prognostic factor and could distinguish the prognostic differences of most clinical subgroups....

Supplementary document for Automatic rock classification of LIBS combined with 1DCNN based on improved Bayesian optimization - 6159990.pdf

GUANGDONG song, Shengen Zhu, WenHAO Zhang, Binxin Hu, Feng Zhu, Hua Zhang, Tong Sun & K. Grattan
Figure S1, Table S1, Figure S2

Data from: Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

Jin Sun, Yu Zhang, Ting Xu, Yang Zhang, Huawei Mu, Yanjie Zhang, Yi Lan, Christopher J. Fields, Jerome H. L. Hui, Wei-Peng Zhang, Runsheng Li, Wenyan Nong, Fiona K. M. Cheung, Jian-Wen Qiu & Pei-Yuan Qian
Hydrothermal vents and methane seeps are extreme deep-sea ecosystems that support dense populations of specialised macrobenthos such as mussels. But lack of genome information hinders understanding of the adaptation of these animals to such inhospitable environment. Here we report the genomes of a deep-sea vent/seep mussel Bathymodiolus platifrons and a shallow-water mussel Modiolus philippinarum. Phylogenetic analysis shows that these mussel species diverged approximately 110.4 million years ago. Many gene families, especially those for stabilising protein...

Annotation of genome of Cladopsammia gracilis (Milne Edwards and Haime, 1848)

Xiangcheng Yuan
Cladopsammia gracilis (Dendrophylliidae), an ahermatypic coral, was sampled in the Sanya Bay in the South China sea. According to skeletal based taxonomy, the genus Cladopsammia is characterized by its phaceloid growth form of corallites basally united with common coenosteum, and well developed Pourtales plan. With both skeletal morphology and mitochondrial study, our samples were identified as Cladopsammia gracilis. In the research, we assembled an genome. The gff and fasta files of conding genes, non-coding genes,...

Additional file 2 of Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Additional file 2: Fig. S1. The phenotypes of WT, Ov-2 and Ov-3 lines. (a) The growing of WT, Ov-2 and Ov-3 lines under control condition. (b) The growing of WT, Ov-2 and Ov-3 lines under RBSDV infection conditions.

Additional file 3 of Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Additional file 3: Table S2. The CDSs of ZmABCB family.

Additional file 1 of Construction and analysis of sample-specific driver modules for breast cancer

Yuanyuan Chen, Haitao Li & Xiao Sun
Additional file 1: Supplementary Figure S1. The identified aberrantly methylated genes for each sample. Supplementary Figure S2. The boxplot of gene mutation frequency and gene methylation aberration frequency. Supplementary Figure S3. Sample-specific methylation aberration driver modules characterize personalized features and also reveal common network patterns for breast cancer samples. Supplementary Figure S4. The number of mutation genes and aberrantly methylated genes of each breast cancer sample among different subtypes. Supplementary Table S1. Pairwise comparisons for...

Construction and analysis of sample-specific driver modules for breast cancer

Yuanyuan Chen, Haitao Li & Xiao Sun
Abstract Background It is important to understand the functional impact of somatic mutation and methylation aberration at an individual level to implement precision medicine. Recent studies have demonstrated that the perturbation of gene interaction networks can provide a fundamental link between genotype (or epigenotype) and phenotype. However, it is unclear how individual mutations affect the function of biological networks, especially for individual methylation aberration. To solve this, we provided a sample-specific driver module construction method...

Pyroptosis regulators exert crucial functions in prognosis, progression and immune microenvironment of pancreatic adenocarcinoma: a bioinformatic and in vitro research

Zhenghai Bai, Fangshi Xu, Xiaodan Feng, Yuan Wu, Junhua Lv, Yu Shi & Honghong Pei
Pyroptosis is an inflammatory programmed cell death, showing potentials to be a novel anti-cancer approach. However, the roles of pyroptosis-related (PR) genes (PRGs) in pancreatic adenocarcinoma (PAAD) remain elusive. In the present study, we constructed a novel PR risk signature through the lasso regression analysis. The risk signature was greatly conducive to PAAD prognostic assessment. PR risk score was identified as an independent prognostic factor and could distinguish the prognostic differences of most clinical subgroups....

The quantifying relationship between the remission duration and the cardiovascular and kidney outcomes in the patients with primary nephrotic syndrome

Xuan Lai, Zhao Cui, Hua Zhang, Yi-miao Zhang, Fang Wang, Xin Wang, Li-qiang Meng, Xu-yang Cheng, Gang Liu & Ming-hui Zhao
Patients with persistent nephrotic-range proteinuria have a high risk of kidney dysfunction and cardiovascular events. Recently, the maintenance of proteinuria remission has been demonstrated to reduce the risk of kidney endpoint. However, the effect of remission duration on cardiovascular outcomes remains unclear. This study enrolled 982 patients with primary nephrotic syndrome who had achieved clinical remission. Remission duration was defined as the maintenance time (months) of the first remission. Arteriosclerotic cardiovascular disease (ASCVD) and kidney...

The quantifying relationship between the remission duration and the cardiovascular and kidney outcomes in the patients with primary nephrotic syndrome

Xuan Lai, Zhao Cui, Hua Zhang, Yi-miao Zhang, Fang Wang, Xin Wang, Li-qiang Meng, Xu-yang Cheng, Gang Liu & Ming-hui Zhao
Patients with persistent nephrotic-range proteinuria have a high risk of kidney dysfunction and cardiovascular events. Recently, the maintenance of proteinuria remission has been demonstrated to reduce the risk of kidney endpoint. However, the effect of remission duration on cardiovascular outcomes remains unclear. This study enrolled 982 patients with primary nephrotic syndrome who had achieved clinical remission. Remission duration was defined as the maintenance time (months) of the first remission. Arteriosclerotic cardiovascular disease (ASCVD) and kidney...

87Sr/86Sr results of Well NK1 from southern South China Sea

Gang Li
Bio-carbonates from Well NK1 were sampled from every chip using a micro-drill. Twenty-four chips were drilled twice and the duplicate samples were used for quality control. Sub-samples of 50 mg were firstly leached with 0.3 N acetic acid and Milli-Q water for 30 min to remove absorbed salt. Rinsed samples were placed in 1.5 ml of 1.0 N acetic acid and sonicated for 2 hrs. Elemental compositions of the carbonate phase were firstly measured on...

Automatic rock classification of LIBS combined with 1DCNN based on improved Bayesian optimization

GUANGDONG song, Shengen Zhu, WenHAO Zhang, Binxin Hu, Feng Zhu, Hua Zhang, Tong Sun & K. Grattan
To achieve automated rock classification and improve classification accuracy, this work discusses an investigation of the combination of laser-induced breakdown spectroscopy (LIBS) and the use of one-dimensional convolutional neural networks (1DCNN). As a result, in this paper, an improved Bayesian optimization algorithm has been proposed where the algorithm has been applied to automatic rock classification, using LIBS and 1DCNN to improve the efficiency of rock structure analysis carried out. Compared to other algorithms, the improved...

Yiguanjian decoction inhibits macrophage M1 polarization and attenuates hepatic fibrosis induced by CCl4/2-AAF

Ying Xu, Wen Xu, Wei Liu, Gaofeng Chen, Shili Jiang, Jiamei Chen, Xun Jian, Hua Zhang, Ping Liu & Yongping Mu
Our previous studies indicated that Yiguanjian decoction (YGJ) has an anti-hepatic-fibrosis effect and could regulate macrophage status. To elucidate the mechanism of YGJ in regulating macrophages. Liver cirrhosis was induced by CCl4 for 12 weeks combined with 2-acetylaminofluorene (2-AAF) for the last 4 weeks in male Wistar rats. YGJ (3.56 mg/kg) orally administered in the last 4 weeks, and SORA (1 mg/kg) as control. In vitro, RAW264.7 cells were treated with lipopolysaccharides (LPSs) to induce...

Automatic rock classification of LIBS combined with 1DCNN based on improved Bayesian optimization

GUANGDONG song, Shengen Zhu, WenHAO Zhang, Binxin Hu, Feng Zhu, Hua Zhang, Tong Sun & K. Grattan
To achieve automated rock classification and improve classification accuracy, this work discusses an investigation of the combination of laser-induced breakdown spectroscopy (LIBS) and the use of one-dimensional convolutional neural networks (1DCNN). As a result, in this paper, an improved Bayesian optimization algorithm has been proposed where the algorithm has been applied to automatic rock classification, using LIBS and 1DCNN to improve the efficiency of rock structure analysis carried out. Compared to other algorithms, the improved...

Automatic rock classification of LIBS combined with 1DCNN based on improved Bayesian optimization

GUANGDONG song, Shengen Zhu, WenHAO Zhang, Binxin Hu, Feng Zhu, Hua Zhang, Tong Sun & K. Grattan
To achieve automated rock classification and improve classification accuracy, this work discusses an investigation of the combination of laser-induced breakdown spectroscopy (LIBS) and the use of one-dimensional convolutional neural networks (1DCNN). As a result, in this paper, an improved Bayesian optimization algorithm has been proposed where the algorithm has been applied to automatic rock classification, using LIBS and 1DCNN to improve the efficiency of rock structure analysis carried out. Compared to other algorithms, the improved...

Additional file 2 of Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Additional file 2: Fig. S1. The phenotypes of WT, Ov-2 and Ov-3 lines. (a) The growing of WT, Ov-2 and Ov-3 lines under control condition. (b) The growing of WT, Ov-2 and Ov-3 lines under RBSDV infection conditions.

Functional analysis revealed the involvement of ZmABCB15 in resistance to rice black-streaked dwarf virus infection

Runqing Yue, Qi Sun, Jianguo Ding, Wenlan Li, Wencai Li, Meng Zhao, Shouping Lu, Tingru Zeng, Hua Zhang, Suxian Zhao, Shuanggui Tie & Zhaodong Meng
Abstract Background Maize rough dwarf disease (MRDD), caused by rice black-streaked dwarf virus (RBSDV) belonging to the Fijivirus genus, seriously threatens maize production worldwide. Three susceptible varieties (Ye478, Zheng 58, and Zhengdan 958) and two resistant varieties (P138 and Chang7–2) were used in our study. Results A set of ATP-binding cassette subfamily B (ABCB) transporter genes were screened to evaluate their possible involvements in RBSDV resistance. In the present study, ZmABCB15, an ABCB transporter family...

Registration Year

  • 2022
    28
  • 2021
    3
  • 2017
    1

Resource Types

  • Text
    13
  • Dataset
    11
  • Collection
    8

Affiliations

  • South China Sea Institute Of Oceanology
    31
  • Southeast University
    26
  • Central South University
    22
  • Chongqing Medical University
    22
  • Shandong Academy of Agricultural Sciences
    22
  • Southern Medical University
    22
  • Hefei University of Technology
    22
  • First Affiliated Hospital of Xi'an Jiaotong University
    22
  • Wuhan University
    22
  • First Affiliated Hospital of Chongqing Medical University
    22