31 Works

Data from: Quantitative trait loci for cold tolerance in chickpea

Clarice J. Coyne, Deus Mugabe, Julia Piaskowski, Ping Zheng, Yu Ma, Erik Landry, Rebecca McGee, Dorrie Main, George Vandemark, Hongbin Zhang & Shahal Abbo
Fall-sown chickpea (Cicer arietinum L.) yields are often double those of spring-sown chickpea in regions with Mediterranean climates that have mild winters. However, winter kill can limit the productivity of fall-sown chickpea. Developing cold-tolerant chickpea would allow the expansion of the current geographic range where chickpea is grown and also improve productivity. The objective of this study was to identify the quantitative trait loci (QTL) associated with cold tolerance in chickpea. An interspecific recombinant inbred...

Data from: Olfaction written in bone: cribriform plate size parallels olfactory receptor gene repertoires in Mammalia

Deborah J. Bird, William J. Murphy, Lester Fox-Rosales, Iman Hamid, Robert A. Eagle & Blaire Van Valkenburgh
The evolution of mammalian olfaction is manifested in a remarkable diversity of gene repertoires, neuroanatomy, and skull morphology across living species. Olfactory receptor genes (ORG), which initiate the conversion of odorant molecules into odor perceptions and help an animal resolve the olfactory world, range in number from a mere handful to several thousand genes across species. Within the snout, each of these ORGs is exclusively expressed by a discrete population of olfactory sensory neurons (OSN),...

Data from: Reproductive effort and success of males in scramble competition polygyny: evidence for trade-offs between foraging and mate-search

Aaron M. Foley, David G. Hewitt, Randy W. DeYoung, Matthew J Schnupp, Mickey W Hellickson & Mitch A. Lockwood
1. Patterns of male reproductive allocation provide insight into life-history characteristics. The trade-offs associated with resource and female group defense are well-defined. However, less is understood about trade-offs in species that practice scramble-competition polygyny, where successful strategies may favor competitive mate-searching rather than contest competition and fighting. 2. White-tailed deer (Odocoileus virginianus) practice scramble-competition polygyny where solitary males search for and assess receptivity of females scattered across the landscape. Physically mature males are expected to...

Data from: Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events

Laurent A. F. Frantz, Anna Rudzinski, Abang Mansyursyah Surya Nugraha, Allowen Evin, James Burton, Ardern Hulme-Beaman, Anna Linderholm, Ross Barnett, Rodrigo Vega, Evan K. Irving-Pease, James Haile, Richard Allen, Kristin Leus, Jill Shephard, Mia Hillyer, Sarah Gillemot, Jeroen Van Den Hurk, Sharron Ogle, Cristina Atofanei, Mark G. Thomas, Friederike Johansson, Abdul Haris Mustari, John Williams, Kusdiantoro Mohamad, Chandramaya Siska Damayanti … & Greger Larson
The high degree of endemism on Sulawesi has previously been suggested to have vicariant origins, dating back 40 Myr ago. Recent studies, however, suggest that much of Sulawesi’s fauna assembled over the last 15 Myr. Here, we test the hypothesis that more recent uplift of previously submerged portions of land on Sulawesi promoted diversification, and that much of its faunal assemblage is much younger than the island itself. To do so, we combined palaeogeographical reconstructions...

Data from: Substantial differences in bias between single-digest and double-digest RAD-seq libraries: a case study

Sarah P. Flanagan & Adam G. Jones
The trade‐offs of using single‐digest vs. double‐digest restriction site‐associated DNA sequencing (RAD‐seq) protocols have been widely discussed. However, no direct empirical comparisons of the two methods have been conducted. Here, we sampled a single population of Gulf pipefish (Syngnathus scovelli) and genotyped 444 individuals using RAD‐seq. Sixty individuals were subjected to single‐digest RAD‐seq (sdRAD‐seq), and the remaining 384 individuals were genotyped using a double‐digest RAD‐seq (ddRAD‐seq) protocol. We analysed the resulting Illumina sequencing data and...

Data from: Approaches to integrating genetic data into ecological networks

Elizabeth L. Clare, Aron J. Fazekas, Natalia V. Ivanova, Robin M. Floyd, Paul D.N. Hebert, Amanda M. Adams, Juliet Nagel, Rebecca Girton, Steven G. Newmaster, M. Brock Fenton & Paul D. N. Hebert
As molecular tools for assessing trophic interactions become common, research is increasingly focused on the construction of interaction networks. Here we demonstrate three key methods for incorporating DNA data into network ecology and discuss analytical considerations using a model consisting of plants, insects, bats and their parasites from the Costa Rican dry forest. The simplest method involves the use of Sanger sequencing to acquire long sequences to validate or refine field identifications, for example of...

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