3,261 Works
The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae)
Qian Wei, An-cheng Liu, Chen Chen, Yuan Lu, Yan Zhang & Shu-Juan Li
Nymphaea atrans belongs to the subgenus Anecphya and displays varied flower colors over successive days. Because of its excellent ornamental characteristics, this species is widely cultivated in waterscape gardens worldwide. Here, we have sequenced the complete chloroplast genome of N. atrans. The whole genome size is 160,990 bp in length with four subregions: large and small single-copy regions of 90,879 and 19,699 bp, respectively, separated by a pair of inverted repeat regions of 25,206 bp...
The complete chloroplast genome of Nymphaea atrans (Surrey Wilfrid Laurance Jacobs, 1992: Nymphaeaceae)
Qian Wei, An-cheng Liu, Chen Chen, Yuan Lu, Yan Zhang & Shu-Juan Li
Nymphaea atrans belongs to the subgenus Anecphya and displays varied flower colors over successive days. Because of its excellent ornamental characteristics, this species is widely cultivated in waterscape gardens worldwide. Here, we have sequenced the complete chloroplast genome of N. atrans. The whole genome size is 160,990 bp in length with four subregions: large and small single-copy regions of 90,879 and 19,699 bp, respectively, separated by a pair of inverted repeat regions of 25,206 bp...
Title_authorname_figures_table_ESM.docx from Feasibility of urban bird occurrence and nest amount evaluation by the street-view image virtual survey
Panli Tian, Lei Wang, Qi Li, Chentao Liang, Danqi She, Siyu Liu, Yuwen Chen, Liuyang Yao, Weiqi Wang, Huimei Wang & Wenjie Wang
Bird observation mainly relies on field surveys, which are time-consuming and laborious. In this study, we explored using street-view images in the virtual survey of urban birds and nests. Using the coastal city of Qingdao as the study area, 47 201 seamless spherical photos at 2741 sites were collected using the Baidu street-view (BSV) map. Single-rater-all photo checks and seven-rater-metapopulation checks were used to find inter–rater repeatability, the best viewing layer for BSV collection, and...
Supplementary material from \"Feasibility of urban bird occurrence and nest amount evaluation by the street-view image virtual survey\"
Panli Tian, Lei Wang, Qi Li, Chentao Liang, Danqi She, Siyu Liu, Yuwen Chen, Liuyang Yao, Weiqi Wang, Huimei Wang & Wenjie Wang
Bird observation mainly relies on field surveys, which are time-consuming and laborious. In this study, we explored using street-view images in the virtual survey of urban birds and nests. Using the coastal city of Qingdao as the study area, 47 201 seamless spherical photos at 2741 sites were collected using the Baidu street-view (BSV) map. Single-rater-all photo checks and seven-rater-metapopulation checks were used to find inter–rater repeatability, the best viewing layer for BSV collection, and...
Regional Alterations of Macroscopy and Histology in Meniscus in an ACL Transection Rabbit Model
Mingru Huang, Huaixuan Sheng, Han Gao, Sijia Feng, Luyi Sun, Jun Chen & Yunxia Li
Background:Although meniscal injury is common after anterior cruciate ligament (ACL) injury, the underlying process in different meniscal regions remains unclear.Purpose:To investigate macroscopic and histological alterations in different meniscal regions in an ACL transection (ACLT) rabbit model.Study Design:Controlled laboratory study.Methods:ACLT was performed on New Zealand White rabbits. Both the medial meniscus (MM) and the lateral meniscus (LM) of the ACLT knees were obtained at 8 (n = 6) and 26 (n = 6) weeks postoperatively. MM...
Supplementary document for Turn-on Stimuli-responsive Switch: Strategies for Activating a New Fluorescence Channel by Pressure - 6337633.pdf
Yongfeng Wan, Bo Li, Yuliang Liu, Dongwei Wang, Lixia Zhu, Qi Li, Hang Yin, Cailong Liu, Mingxing Jin & Jianbo Gao
figures and table
The Transmembrane Protein TM4SF3 Interacts with AR and AR-V7 and is Recruited to AR Target Genes
Prabesh Khatiwada, Ujjwal Rimal, Zhengyang Han, Mamata Malla, Jun Zhou & Lirim Shemshedini
Supplementary Data
Effects of radiation on respiratory disease mortality: analysis of the national registry for radiation workers in United Kingdom
Wei Zhang, Richard G. E Haylock, Michael Gillies, Nezahat Hunter & Erica Zhang
While some evidence of an effect of radiation exposure on respiratory disease at low dose levels has now emerged, there is heterogeneity in the risks between different studies and countries. In this paper, we aim to show the effect of radiation on three different sub-types of respiratory disease mortality through the analysis of the NRRW cohort in UK. The NRRW cohort consisted of 174,541 radiation workers. Doses to the surface of the body were monitored...
sj-docx-1-tam-10.1177_17588359231165968 – Supplemental material for A phase Ia dose-escalation trial of Ametumumab (a fully human monoclonal antibody against epidermal growth factor receptor) in patients with advanced solid malignancies
Da Li, Hong Pan, Wei Wang, Yanan Xue, Yong Fang, Haizhou Lou, Qin Pan, Wei Jin, Yu Zheng, Weidong Han, Kongli Zhu, Xianfeng Zhao, Rong Xu, Jin Han & Hongming Pan
Supplemental material, sj-docx-1-tam-10.1177_17588359231165968 for A phase Ia dose-escalation trial of Ametumumab (a fully human monoclonal antibody against epidermal growth factor receptor) in patients with advanced solid malignancies by Da Li, Hong Pan, Wei Wang, Yanan Xue, Yong Fang, Haizhou Lou, Qin Pan, Wei Jin, Yu Zheng, Weidong Han, Kongli Zhu, Xianfeng Zhao, Rong Xu, Jin Han and Hongming Pan in Therapeutic Advances in Medical Oncology
Additional file 2 of Predictive effect of triglyceride-glucose index on clinical events in patients with acute ischemic stroke and type 2 diabetes mellitus
Dong Liu, Kaixuan Yang, Hongqiu Gu, Zixiao Li, Yongjun Wang & Yilong Wang
Additional file 2: Table S2. HRs (95% CIs) for risk of events in pre-diabetes patients with acute ischemic stroke according to TyG index quartiles in this study.
Additional file 1 of A bibliometric analysis of chronic subdural hematoma since the twenty-first century
Rundong Chen, Yanpeng Wei, Xiaolong Xu, Renkun Zhang, Yuhao Tan, Guanghao Zhang, Hongwei Yin, Dongwei Dai, Qiang Li, Rui Zhao, Qinghai Huang, Yi Xu, Pengfei Yang, Jianmin Liu & Qiao Zuo
Additional file 1: Table S1. Top 10 countries with most publications.
Additional file 3 of Predictive value of CAC score combined with clinical features for obstructive coronary heart disease on coronary computed tomography angiography: a machine learning method
Yongkui Ren, Yulin Li, Weili Pan, Da Yin & Jie Du
Additional file 3. Supplementary Table 1. Pre-implant clinical features included in the analysis.
Predictive value of CAC score combined with clinical features for obstructive coronary heart disease on coronary computed tomography angiography: a machine learning method
Yongkui Ren, Yulin Li, Weili Pan, Da Yin & Jie Du
Abstract Objective We investigated the predictive value of clinical factors combined with coronary artery calcium (CAC) score based on a machine learning method for obstructive coronary heart disease (CAD) on coronary computed tomography angiography (CCTA) in individuals with atypical chest pain. Methods The study included data from 1,906 individuals undergoing CCTA and CAC scanning because of atypical chest pain and without evidence for the previous CAD. A total of 63 variables including traditional cardiovascular risk...
Additional file 1 of The reporting of prognostic prediction models for obstetric care was poor: a cross-sectional survey of 10-year publications
Chunrong Liu, Yana Qi, Xinghui Liu, Meng Chen, Yiquan Xiong, Shiyao Huang, Kang Zou, Jing Tan & Xin Sun
Additional file 1. Search strategy.
Additional file 1 of Exosomal circTUBGCP4 promotes vascular endothelial cell tipping and colorectal cancer metastasis by activating Akt signaling pathway
Chen Chen, Yang Liu, Lin Liu, Chaohua Si, Yanxin Xu, Xiaoke Wu, Chengzeng Wang, Zhenqiang Sun & Qiaozhen Kang
Additional file 1: Fig. S1. The expression and prognosis of CD34 and ITGB1 in CRC samples from the GEO database. (a) High CD34 expression in the bevacizumab-resistant group compared to the bevacizumab-non-resistant group from GSE19860 and GSE19862 data. (b) High ITGB1 expression in the CRC group compared to the normal group from GSE71187. Then, the OS of ITGB1 in CRC was analyzed from the data of GSE71187. Log-rank test was used to estimate the significance....
Additional file 2 of Hypoxia induces alterations in tRNA modifications involved in translational control
Huanping Guo, Lin Xia, Wei Wang, Wei Xu, Xipeng Shen, Xiao Wu, Tong He, Xuelin Jiang, Yinying Xu, Pan Zhao, Dongmei Tan, Xi Zhang & Yunfang Zhang
Additional file 2: Fig. S2. Multiple linear dependent correlations among different RNA modifications. (A and B) The linear correlations analysis between RNA modifications in tRNA-enriched fragments and 17-50 nt sncRNAs across multiple tissues (brain, liver, heart, spleen, lung and testis) (n = 3, Additional file 10). (C and D) The linear correlations of some specific RNA modifications in different RNA classes across multiple tissues. The linear regression analysis was done by GraphPad 8, the linear...
Identification of four metabolic subtypes and key prognostic markers in lung adenocarcinoma based on glycolytic and glutaminolytic pathways
Jinjin Zhang, Xiaopeng Wang, Congkuan Song & Qi Li
Abstract Background Glucose and glutamine are the main energy sources for tumor cells. Whether glycolysis and glutaminolysis play a critical role in driving the molecular subtypes of lung adenocarcinoma (LUAD) is unknown. This study attempts to identify LUAD metabolic subtypes with different characteristics and key genes based on gene transcription profiling data related to glycolysis and glutaminolysis, and to construct prognostic models to facilitate patient outcome prediction. Methods LUAD related data were obtained from the...
Additional file 1 of Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals
Shiping Shan, Wei Cheng, Yilu Li, Min Zhang, Zhudong Liu, Yushuang Wang, Xiaowu Wei, Zujiao Fu, Shandong Wu, Dongxia Du & Zhaohui Guo
Additional file 1: Supplementary Table S1. Classification and general features of Citrobacter sp. XT1-2-2.
Additional file 3 of Identification of key module and hub genes in pulpitis using weighted gene co-expression network analysis
Denghui Zhang, Chen Zheng, Tianer Zhu, Fan Yang & Yiqun Zhou
Additional file 3. Detailed process of GO analysis.
Additional file 4 of Crosstalk between 5-methylcytosine and N6-methyladenosine machinery defines disease progression, therapeutic response and pharmacogenomic landscape in hepatocellular carcinoma
Yu Tian, Haijuan Xiao, Yanhui Yang, Pingping Zhang, Jiahui Yuan, Wei Zhang, Lijie Chen, Yibao Fan, Jinze Zhang, Huan Cheng, Tingwei Deng, Lin Yang, Weiwei Wang, Guoyong Chen, Peiqin Wang, Peng Gong, Xing Niu & Xianbin Zhang
Additional file 4: Supplementary figure 4. Co-expression of TET3 and YTHDC1 in HCC cells. (A-F) Western blot for the expression of TET3 and YTHDC1 in the presence or absence of si-TET3 or si-YTHDC1 in HepG2 and Huh-7 cells. **p-value<0.01; ***p-value<0.001; ****p-value<0.0001.
Additional file 5 of Crosstalk between 5-methylcytosine and N6-methyladenosine machinery defines disease progression, therapeutic response and pharmacogenomic landscape in hepatocellular carcinoma
Yu Tian, Haijuan Xiao, Yanhui Yang, Pingping Zhang, Jiahui Yuan, Wei Zhang, Lijie Chen, Yibao Fan, Jinze Zhang, Huan Cheng, Tingwei Deng, Lin Yang, Weiwei Wang, Guoyong Chen, Peiqin Wang, Peng Gong, Xing Niu & Xianbin Zhang
Additional file 5: Supplementary figure 5. Prognostic value of 5mC/m6A regulators. (A) Heatmap showing the univariate cox regression analysis of 5mC/m6A regulators with OS across pan-cancer. (B) Forest plot for the univariate cox regression analysis of 5mC/m6A regulators with HCC patients’ OS.
Additional file 2 of Variation in mitogenome structural conformation in wild and cultivated lineages of sorghum corresponds with domestication history and plastome evolution
Shuo Zhang, Jie Wang, Wenchuang He, Shenglong Kan, Xuezhu Liao, David R. Jordan, Emma S. Mace, Yongfu Tao, Alan W. Cruickshank, Robert Klein, Daojun Yuan, Luke R. Tembrock & Zhiqiang Wu
Additional file 2: Supplementary Fig. 1. Mitogenome structure of seven sorghum accessions whenusing 10G of CLR data. Supplementary Fig. 2. Mitogenome structure of seven sorghum accessions when using all available CLR data. Supplementary Fig. 3. Example of the final mitogenome conformation process. The conformation is from the mitogenome assembled by SPAdes using corrected CLR reads of IS929, the color-coded portion is contig-01 of IS929 assembled by Flye using 10G CLR, which were compared to the...
A PK/PD model for the evaluation of clinical rifaximin dosage for the treatment of dairy cow mastitis induced by Escherichia coli
Honglei Wang, Chen Chen, Chunshuang Liu, Xiaojie Chen, Jingju Zhang, Yufeng Wang, Mingyue Han, Yiming Liu & Xiubo Li
Abstract Escherichia coli (E. coli) is an opportunistic pathogen that can cause clinical mastitis in dairy cows worldwide. Mastitis produces severe symptoms in dairy cows, such as udder inflammation, the production of harmful substances, reduced milk production, and altered milk quality. Intramammary injections of rifaximin have a beneficial effect on dairy cow mastitis, especially for mastitis caused by E. coli. However, we do not know whether the currently accepted clinical administration scheme is reasonable. Therefore,...
Additional file 1 of Comparing the diagnostic performance of QuantiFERON-TB Gold Plus with QFT-GIT, T-SPOT.TB and TST: a systematic review and meta-analysis
Yu Zhang, Guozhong Zhou, Wei Shi, Weili Shi, Meijun Hu, Defu Kong, Rong Long, Jian He & Nan Chen
Additional file 1: Table S1. PRISMA checklist. Table S2. Search strategy. Table S2. Search strategy. Table S3. Inclusion and partial exclusion for patients with active TB. Table S4. Inclusion and partial exclusion for populations with very low risk of TB exposure. Table S5. Inclusion and partial exclusion for high-risk populations. Table S6. Populations considered high-risk. Table S7. Details of excluded criteria. Table S8. QUADAS-2 adapted quality assessment criteria for patients with active TB. Table S9....
Additional file 1 of Tumor stemness score to estimate epithelial-to-mesenchymal transition (EMT) and cancer stem cells (CSCs) characterization and to predict the prognosis and immunotherapy response in bladder urothelial carcinoma
Yanlong Zhang, Xin Zhang, Xuefeng Huang, Xiaomeng Tang, Menghan Zhang, Ziyi Li, Xiaopeng Hu, Min Zhang, Xi Wang & Yong Yan
Additional file 1: Figure 1. Overview of single-cell and prognostic value of each type cell’s biomarker in BLCA tissue. (A) The workflow of this study. (B) The t-SNE plot of all the single cells, with each color coded for 7 major cell clusters. (C) Differentiation trajectory of 7 cell clusters in BLCA. The violin plot of gene expression of RGS5 (D), KRT7 (E), and CD44 (F) in cluster0-6. (G) The bubble plot of gene expression...
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Affiliations
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ShenZhen People’s Hospital3,261
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Chinese Academy of Medical Sciences & Peking Union Medical College2,652
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Shanghai Jiao Tong University2,549
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Sichuan University2,402
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Sun Yat-sen University2,315
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Zhejiang University2,270
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Fudan University2,206
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Huazhong University of Science and Technology2,166
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Capital Medical University2,109
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Central South University2,002