543 Works
Processes and events in the centre: a dynamic data model for representing spatial change
Yufeng He, Yehua Sheng, Barbara Hofer, Yi Huang & Jiarui Qin
Traditional geographic information system models for map representation use superposition of layers to model physical reality, neglecting the integrity of the environment and limiting the ability to express interactions between features in complex phenomenon. This results in limitations regarding dynamic simulation and geographic causality reasoning. In this paper, we extend the framework of the geographic scene by formalizing the relationship between geographic processes and events to construct a dynamic data model: the process-event-centred dynamic data...
Primary lateral sclerosis natural history study – planning, designing, and early enrollment
Hiroshi Mitsumoto, Grace Jang, Ikjae Lee, Zachary Simmons, Alexander V. Sherman, Daragh Heitzman, Eric Sorenson, Ken Cheung, Jinsy Andrews, Matthew Harms, Neil A. Shneider, Regina Santella, Sabrina Paganoni, Senda Ajroud-Driss, J. Americo M. Fernandes, Katherine M. Burke, Kelly Gwathmey, Ali A. Habib, Nicholas J. Maragakis, David Walk, Christina Fournier, Terry Heiman-Patterson, James Wymer, Frank Diaz, Stephen N. Scelsa … & Lorne Zinman
Introduction/Aims. Primary lateral sclerosis (PLS) is exceedingly rare and has been an enigmatic disease. Recent progress has drastically changed this perception, with early biomarkers being investigated and potential medications for PLS emerging at the preclinical stage. The aim of this paper is to describe a study of PLS natural history and discuss the limitations and proposed solutions to the study of a rare and slowly progressive disease. Methods. The PLS Natural History Study is a...
The use of technology in the treatment of youth with eating disorders: A scoping review
Rachel Dufour, Kaylee Novack, Louis Picard, Nicholas Chadi & Linda Booij
Abstract Background Adolescence and young adulthood is a high-risk period for the development of eating disorders. In recent years, there has been an increase in use of technology-based interventions (TBIs) for the treatment of eating disorders. The objective of this study was to determine the types of technology used for eating disorder treatment in youth and their effectiveness. Methods A scoping review was conducted according to PRISMA-ScR guidelines. Four databases were searched. Eligible articles included:...
Additional file 1 of Head movement kinematics are altered during balance stability exercises in individuals with vestibular schwannoma
Omid A. Zobeiri, Lin Wang, Jennifer L. Millar, Michael C. Schubert & Kathleen E. Cullen
Additional file 1. Additional Tables and Figure.
Additional file 3 of A longitudinal census of the bacterial community in raw milk correlated with Staphylococcus aureus clinical mastitis infections in dairy cattle
Soyoun Park, Dongyun Jung, Ianina Altshuler, Daryna Kruban, Simon Dufour & Jennifer Ronholm
Additional file 3: Table S2. Microbial changes before, during, and after S. aureus clinical mastitis in Group I and Group II
Additional file 4 of A longitudinal census of the bacterial community in raw milk correlated with Staphylococcus aureus clinical mastitis infections in dairy cattle
Soyoun Park, Dongyun Jung, Ianina Altshuler, Daryna Kruban, Simon Dufour & Jennifer Ronholm
Additional file 4: Table S3. Etiological agents isolated from clinical mastitic milk samples
Additional file 5 of A longitudinal census of the bacterial community in raw milk correlated with Staphylococcus aureus clinical mastitis infections in dairy cattle
Soyoun Park, Dongyun Jung, Ianina Altshuler, Daryna Kruban, Simon Dufour & Jennifer Ronholm
Additional file 5: Table S4. Microbial network analysis in milk samples (n = 583)
Ecological quality assessment and monitoring using a time-series remote sensing-based ecological index (ts-RSEI)
Chao Sun, Jialin Li, Yongchao Liu, Luodan Cao, Jiahao Zheng, Zhenjie Yang, Junwei Ye & Yue Li
Ecological quality assessment is fundamental to revealing changes in ecological environments before the development of effective ecological conservation policies. The complex ecological environment can be assessed more reliably when multiple remote sensing indices are integrated, such as in the use of the prevalent Remote Sensing-based Ecological Index (RSEI). However, for effective ecological quality assessment, the requirement of acquisition time consistency for images has become an outstanding issue for broadening the application of the RSEI. In...
Doubly Robust Estimation of Optimal Dosing Strategies
Juliana Schulz & Erica E. M. Moodie
The goal of precision medicine is to tailor treatment strategies on an individual patient level. Although several estimation techniques have been developed for determining optimal treatment rules, the majority of methods focus on the case of a dichotomous treatment, an example being the dynamic weighted ordinary least squares regression approach of Wallace and Moodie. We propose an extension to the aforementioned framework to allow for a continuous treatment with the ultimate goal of estimating optimal...
Pre-concentration of quartz from sea sand through superconducting high gradient magnetic separation technology
Yongkui Li, Suqin Li, Xiaodong Pan, Xin Zhao & Penghui Guo
In this study, a superconducting high gradient magnetic separation (S-HGMS) technology was used to separate and extract quartz from sea sand. Under optimal conditions (i.e., a magnetic flow ratio of 0.085 T·s/m, slurry flow velocity of 400 ml/min, and pulp concentration of 40 g/L), the SiO2 grade increased from 79.45% of the raw material to 91.35% of quartz concentrate, and the removal rate of Al and Fe reached 91.97% and 82.10%, respectively. Weakly magnetic particles...
Skilled Nursing Facility Participation in Bundled Payments Was Related to Small Increases in Nurse Staffing Levels
Meiling Ying, Helena Temkin-Greener, Caroline P. Thirukumaran, Karen E. Joynt Maddox, Robert G. Holloway & Yue Li
Medicare implemented Bundled Payments for Care Improvement (BPCI) Model 3 in 2013, in which participating skilled nursing facilities (SNFs) were accountable for episode costs. We performed comparative interrupted time series analyses to evaluate associations between SNF BPCI participation and nurse staffing levels, using Medicare claims, resident assessments, and facility-level and market-level files of 2010–2017. For persistent-participating SNFs, BPCI was associated with improved certified nursing assistant (CNA) staffing levels (differential change = .03 hours, p =...
Skilled Nursing Facility Participation in Bundled Payments Was Related to Small Increases in Nurse Staffing Levels
Meiling Ying, Helena Temkin-Greener, Caroline P. Thirukumaran, Karen E. Joynt Maddox, Robert G. Holloway & Yue Li
Medicare implemented Bundled Payments for Care Improvement (BPCI) Model 3 in 2013, in which participating skilled nursing facilities (SNFs) were accountable for episode costs. We performed comparative interrupted time series analyses to evaluate associations between SNF BPCI participation and nurse staffing levels, using Medicare claims, resident assessments, and facility-level and market-level files of 2010–2017. For persistent-participating SNFs, BPCI was associated with improved certified nursing assistant (CNA) staffing levels (differential change = .03 hours, p =...
Additional file 3 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments
Jun Su, Yue Li, Qing Liu, Gang Peng, Chaoying Qin & Yang Li
Additional file 3: Fig. S3. The time dependent ROC curves for other three prognostic models. A Time dependent ROC curves for immune-related gene signature in the TCGA GBM cohort. B Time dependent ROC curves for pyroptosis-related gene signature in the TCGA GBM cohort. C Time dependent ROC curves for autophagy-related gene signature in the TCGA GBM cohort.
Additional file 4 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments
Jun Su, Yue Li, Qing Liu, Gang Peng, Chaoying Qin & Yang Li
Additional file 4: Fig. S4. Validation of independence of our risk score as a prognostic factor. A The forest plot showed the univariate cox analysis using risk score, age, radiotherapy, TMZ chemotherapy, and gender as variates in the GSE16011 GBM cohort. B The forest plot showed the multivariate cox analysis using risk score, age, radiotherapy, and TMZ chemotherapy as variates in the GSE16011 GBM cohort. C Stratified OS analysis in GSE16011 GBM patients with different...
Additional file 6 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments
Jun Su, Yue Li, Qing Liu, Gang Peng, Chaoying Qin & Yang Li
Additional file 6: Table S1. The mitochondria-related genes extracted from the uniprot database.
Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments
Jun Su, Yue Li, Qing Liu, Gang Peng, Chaoying Qin & Yang Li
Abstract Background Glioblastoma (GBM) is the most common primary malignant brain tumor that leads to lethality. Several studies have demonstrated that mitochondria play an important role in GBM and that mitochondria-related genes (MRGs) are potential therapeutic targets. However, the role of MRGs in GBM remains unclear. Methods Differential expression and univariate Cox regression analyses were combined to screen for prognostic differentially-expressed (DE)-MRGs in GBM. Based on LASSO Cox analysis, 12 DE-MRGs were selected to construct...
Additional file 7 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments
Jun Su, Yue Li, Qing Liu, Gang Peng, Chaoying Qin & Yang Li
Additional file 7: Table S2. The primer sequences used in the study.
Additional file 8 of Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments
Jun Su, Yue Li, Qing Liu, Gang Peng, Chaoying Qin & Yang Li
Additional file 8: Table S3. The 201 DE-MRGs between neoplatstic and non-neoplastic cells.
Sand impingements on cathodic protection of marine carbon steel in natural sea water
Shan Gao, Xiaohui Zou, Yubin Zhao, Hao Chen, Qiliang Zhang, Yi Huang & Yunze Xu
In this work, the influence of sand impingements on cathodic protection (CP) of marine carbon steel in natural sea water was studied in comparison with the CP performances in static and flowing sea water without sand particles. Results show that the propagation of local active anodic dissolution at the steel inclusions could be totally inhibited by providing sufficient cathodic current in the sea water free of sand particles. However, the local ‘CP shielding’, potential fluctuation...
Additional file 10 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis
Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 10: Table S5. The list of DMRs and annotation.
Additional file 11 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis
Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 11: Table S6. The list of genes harboring DMCs or overlapping with DMRs.
Additional file 13 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis
Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 13: Table S8. The list of differentially methylated haplotype blocks (dMHBs) and functional enrichment for hyper dMHBs.
Additional file 17 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis
Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 17: Table S12. The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes).
Additional file 2 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis
Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 2: Fig. S2. Methylation status of differentially methylated sites. (A-B) Volcano plots showing DMCs in the context of CHG (A) and CHH (B). (C) Bar plots showing distribution of differences in methylation levels of DMCs.
Additional file 7 of Methylome and transcriptome data integration reveals potential roles of DNA methylation and candidate biomarkers of cow Streptococcus uberis subclinical mastitis
Mengqi Wang, Nathalie Bissonnette, Mario Laterrière, Pier-Luc Dudemaine, David Gagné, Jean-Philippe Roy, Xin Zhao, Marc-André Sirard & Eveline M. Ibeagha-Awemu
Additional file 7: Table S2. Read mapping statistics of whole-genome bisulfite sequencing data and RNA sequencing data of six cows.
Resource Types
Affiliations
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McGill University543
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First Affiliated Hospital of Soochow University179
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Soochow University175
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Shanghai Jiao Tong University174
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Sun Yat-sen University140
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Shandong Agricultural University137
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Xuzhou Medical College134
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Zhejiang University132
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Chinese Academy of Medical Sciences & Peking Union Medical College132
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Wuhan University129