14 Works

Additional file 1 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 1: Fig S1. Frequency of different haplotypes detected in pvama-1 DI of P. vivax samples collected from different districts of KP, Pakistan

Veloporphyrellus latisporus, a new and noteworthy species from moist temperate forests of Pakistan

Junaid Khan, Sadiq Ullah, Hassan Sher, Muhammad Fiaz & Abdul Khalid
Veloporphyrellus latisporus is proposed as a new species based on morphological characters and supporting molecular data from ITS and LSU regions of the nuclear DNA. The new species is characterized by its red to reddish brown granulose pileus and comparatively broader basidiospores. A key to the species of Veloporphyrellus is provided. This is the first report of any Veloporphyrellus species from Pakistan.

Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Abstract Background Plasmodium vivax apical membrane antigen-1 (pvama-1) is an important vaccine candidate against Malaria. The genetic composition assessment of pvama-1 from wide-range geography is vital to plan the antigen based vaccine designing against Malaria. Methods The blood samples were collected from 84 P. vivax positive malaria patients from different districts of Khyber Pakhtunkhwa (KP) province of Pakistan. The highly polymorphic and immunogenic domain-I (DI) region of pvama-1 was PCR amplified and DNA sequenced. The...

Cortinarius brunneocarpus var. microsporus, an interesting variety with Eurasian distribution

Junaid Khan, Hassan Sher, Shah Hussain & Abdul Nasir Khalid
Cortinarius brunneocarpus var. microsporus is described and illustrated from coniferous forests of District Swat, Pakistan based on morphological characters and phylogenetic analyses of the nuclear rDNA internal transcribed spacer (ITS) region. It is morphologically well-supported by significantly smaller basidiospores which are moderately to densely verrucose and with a suprahilar depression The new variety has Eurasian distribution and is being reported from Pakistan, Norway and Estonia. Differences between the new variety and similar taxa are briefly...

Additional file 2 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 2: Table S1. The haplotypes identified in pvama-1 DI region of KP, Pakistan P. vivax isolates.

Additional file 3 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 3: Fig S2. Linkage disequilibrium (LD) pattern of pvama-1 DI sequences of P. vivax isolates from KP, Pakistan. The LD index (R2) (Y-axis) plotted against nucleotide distance (X-axis) using a two tailed Fisher’s exact test.

Additional file 3 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 3: Fig S2. Linkage disequilibrium (LD) pattern of pvama-1 DI sequences of P. vivax isolates from KP, Pakistan. The LD index (R2) (Y-axis) plotted against nucleotide distance (X-axis) using a two tailed Fisher’s exact test.

Additional file 5 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 5: Fig S4. The principle component analysis (PCA) of pvama-1 DI sequences. Different colors depict different populations groups. This include KP Pakistan (as a single group) and worldwide samples.

Additional file 1 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 1: Fig S1. Frequency of different haplotypes detected in pvama-1 DI of P. vivax samples collected from different districts of KP, Pakistan

Additional file 4 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 4: Fig S3. Pearson correlation plot of KP and global pvama-1 samples based on pairwise Fst values. The plot shows clustering and correlation between the groups in hierarchical order. The dark brackets and large sizes depict the minimum genetic distinction and high correlation.

Additional file 4 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 4: Fig S3. Pearson correlation plot of KP and global pvama-1 samples based on pairwise Fst values. The plot shows clustering and correlation between the groups in hierarchical order. The dark brackets and large sizes depict the minimum genetic distinction and high correlation.

Additional file 5 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 5: Fig S4. The principle component analysis (PCA) of pvama-1 DI sequences. Different colors depict different populations groups. This include KP Pakistan (as a single group) and worldwide samples.

Additional file 2 of Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Additional file 2: Table S1. The haplotypes identified in pvama-1 DI region of KP, Pakistan P. vivax isolates.

Population genetic analyses inferred a limited genetic diversity across the pvama-1 DI domain among Plasmodium vivax isolates from Khyber Pakhtunkhwa regions of Pakistan

Ibrar Ullah, Sahib Gul Afridi, Muhammad Israr, Hizbullah Khan, Sulaiman Shams, Komal Zaib, Huong Giang Le, Jung-Mi Kang, Byoung-Kuk Na & Asifullah Khan
Abstract Background Plasmodium vivax apical membrane antigen-1 (pvama-1) is an important vaccine candidate against Malaria. The genetic composition assessment of pvama-1 from wide-range geography is vital to plan the antigen based vaccine designing against Malaria. Methods The blood samples were collected from 84 P. vivax positive malaria patients from different districts of Khyber Pakhtunkhwa (KP) province of Pakistan. The highly polymorphic and immunogenic domain-I (DI) region of pvama-1 was PCR amplified and DNA sequenced. The...

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