41 Works

Assembly and annotation of eleven Salix (shrub willow) genomes

Brennan Hyden, Kai Feng, Timothy Yates, Sara Jawdy, Chelsea Cereghino, Lawrence Smart & Wellington Muchero
The shrub willows (Salix section Vetrix) are an emerging bioenergy crop in North America and Eurasia. However, genomics resources in this section are still quite limited, with only a few reference genomes available, despite many species in use in breeding programs. Here we present de novo assemblies and annotations of eleven shrub willow genomes from six species. Copy number variation of candidate sex determination genes within each genome was characterized and revealed remarkable differences in...

Additional file 1 of Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis

Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas & Bin Yang
Additional file 1: Figure S1. The overall workflow for identifying bacterial lignin degradation pathways. Figure S2. GC–MS analysis of lignin breakdown products. Figure S3. Lignin breakdown products identified by GC–MS. Figure S4. The variation of peaks area of all lignin breakdown products. Figure S5. Main detected lignin linkages. Table S1. Occurrence of putative degradation products of lignin in different treatment conditions. Table S2. Grouped lignin breakdown products among all treatments. Table S3. Main lignin 2D...

Additional file 2 of Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis

Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas & Bin Yang
Additional file 2: Table S4. Proteomic analysis of the intracellular and secretome in P. putida KT2440.

Additional file 3 of Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis

Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas & Bin Yang
Additional file 3. A list of abbreviations is included.

sj-docx-1-cat-10.1177_10760296221132551 - Supplemental material for Prescribing Trends of Oral Anticoagulants from 2010 to 2020 in Shanghai, China: A Retrospective Study

Chi Zhang, Jia Wang, Ya Yang, Er-Li Ma, Hou-Wen Lin, Bing-Long Liu & Zhi-Chun Gu
Supplemental material, sj-docx-1-cat-10.1177_10760296221132551 for Prescribing Trends of Oral Anticoagulants from 2010 to 2020 in Shanghai, China: A Retrospective Study by Chi Zhang, Jia Wang, Ya Yang, Er-Li Ma, Hou-Wen Lin, Bing-Long Liu and Zhi-Chun Gu in Clinical and Applied Thrombosis/Hemostasis

Prescribing Trends of Oral Anticoagulants from 2010 to 2020 in Shanghai, China: A Retrospective Study

Chi Zhang, Jia Wang, Ya Yang, Er-Li Ma, Hou-Wen Lin, Bing-Long Liu & Zhi-Chun Gu
AimNon-vitamin K antagonist oral anticoagulants (NOACs) were developed as an alternative to warfarin to prevent thromboembolism in patients with atrial fibrillation (AF), prosthetic heart valves, venous thromboembolism (VTE), or other thrombotic disorders. The aim of this study is to explore the trends in prescribing OACs, including warfarin and NOACs, in Shanghai, China.MethodsPrescription data of OACs were retrospectively collected from Rx Analysis System from 2010 to 2020 in Shanghai, China. Comparisons were made on the trends...

Prescribing Trends of Oral Anticoagulants from 2010 to 2020 in Shanghai, China: A Retrospective Study

Chi Zhang, Jia Wang, Ya Yang, Er-Li Ma, Hou-Wen Lin, Bing-Long Liu & Zhi-Chun Gu
AimNon-vitamin K antagonist oral anticoagulants (NOACs) were developed as an alternative to warfarin to prevent thromboembolism in patients with atrial fibrillation (AF), prosthetic heart valves, venous thromboembolism (VTE), or other thrombotic disorders. The aim of this study is to explore the trends in prescribing OACs, including warfarin and NOACs, in Shanghai, China.MethodsPrescription data of OACs were retrospectively collected from Rx Analysis System from 2010 to 2020 in Shanghai, China. Comparisons were made on the trends...

Additional file 1 of Genotyping and biofilm formation of Mycoplasma hyopneumoniae and their association with virulence

Yuzi Wu, Yanfei Yu, Lizhong Hua, Yanna Wei, Yuan Gan, Hafizah Yousuf Chenia, Yixuan Wang, Xing Xie, Jia Wang, Maojun Liu, Guoqing Shao, Qiyan Xiong & Zhixin Feng
Additional file 1. Serological tests of M. hyopneumoniae IgG antibodies for detection of M. hyopneumoniae antibody-negative pigs.

Additional file 1 of Genotyping and biofilm formation of Mycoplasma hyopneumoniae and their association with virulence

Yuzi Wu, Yanfei Yu, Lizhong Hua, Yanna Wei, Yuan Gan, Hafizah Yousuf Chenia, Yixuan Wang, Xing Xie, Jia Wang, Maojun Liu, Guoqing Shao, Qiyan Xiong & Zhixin Feng
Additional file 1. Serological tests of M. hyopneumoniae IgG antibodies for detection of M. hyopneumoniae antibody-negative pigs.

Additional file 2 of Genotyping and biofilm formation of Mycoplasma hyopneumoniae and their association with virulence

Yuzi Wu, Yanfei Yu, Lizhong Hua, Yanna Wei, Yuan Gan, Hafizah Yousuf Chenia, Yixuan Wang, Xing Xie, Jia Wang, Maojun Liu, Guoqing Shao, Qiyan Xiong & Zhixin Feng
Additional file 2. The presence of M. hyopneumoniae in lung tissues (qPCR) and clinical observations of pigs post-infection.

Additional file 5 of Genotyping and biofilm formation of Mycoplasma hyopneumoniae and their association with virulence

Yuzi Wu, Yanfei Yu, Lizhong Hua, Yanna Wei, Yuan Gan, Hafizah Yousuf Chenia, Yixuan Wang, Xing Xie, Jia Wang, Maojun Liu, Guoqing Shao, Qiyan Xiong & Zhixin Feng
Additional file 5. Correlation of virulence and biofilm.

Alleviative effects of foraging exercise on depressive-like behaviors in chronic mild stress-induced ischemic rat model

Xi Tao, Siyuan Wu, Wenjing Tang, Lu Li, Lijun Huang, Danheng Mo, Chujuan Liu, Tao Song, Shuling Wang, Jia Wang & Juan He
Poststroke depression (PSD) is a common complication that seriously affects the functional recovery and prognosis of an individual. As some patients with PSD fail to respond to drug therapy, it is urgent to find a viable alternative treatment. An active exercise program known as foraging exercise (FE), using food as bait, was designed. First, focal ischemia and chronic unpredictable mild stress (CUMS) were used to establish a PSD model in rats. FE was then performed...

Additional file 1 of Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis

Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas & Bin Yang
Additional file 1: Figure S1. The overall workflow for identifying bacterial lignin degradation pathways. Figure S2. GC–MS analysis of lignin breakdown products. Figure S3. Lignin breakdown products identified by GC–MS. Figure S4. The variation of peaks area of all lignin breakdown products. Figure S5. Main detected lignin linkages. Table S1. Occurrence of putative degradation products of lignin in different treatment conditions. Table S2. Grouped lignin breakdown products among all treatments. Table S3. Main lignin 2D...

Additional file 3 of Genotyping and biofilm formation of Mycoplasma hyopneumoniae and their association with virulence

Yuzi Wu, Yanfei Yu, Lizhong Hua, Yanna Wei, Yuan Gan, Hafizah Yousuf Chenia, Yixuan Wang, Xing Xie, Jia Wang, Maojun Liu, Guoqing Shao, Qiyan Xiong & Zhixin Feng
Additional file 3. Correction of virulence and results of the in vitro tracheal infection.

Alleviative effects of foraging exercise on depressive-like behaviors in chronic mild stress-induced ischemic rat model

Xi Tao, Siyuan Wu, Wenjing Tang, Lu Li, Lijun Huang, Danheng Mo, Chujuan Liu, Tao Song, Shuling Wang, Jia Wang & Juan He
Poststroke depression (PSD) is a common complication that seriously affects the functional recovery and prognosis of an individual. As some patients with PSD fail to respond to drug therapy, it is urgent to find a viable alternative treatment. An active exercise program known as foraging exercise (FE), using food as bait, was designed. First, focal ischemia and chronic unpredictable mild stress (CUMS) were used to establish a PSD model in rats. FE was then performed...

Data From: Fixed depth Hamiltonian simulation via Cartan decomposition

Efekan Kökcü, Thomas Steckmann, Yan Wang, James K. Freericks, Eugene F. Dumitrescu & Alexander F. Kemper
Simulating quantum dynamics on classical computers is challenging for large systems due to the significant memory requirements. Simulation on quantum computers is a promising alternative, but fully optimizing quantum circuits to minimize limited quantum resources remains an open problem. We tackle this problem presenting a constructive algorithm, based on Cartan decomposition of the Lie algebra generated by the Hamiltonian, that generates quantum circuits with time-independent depth. We highlight our algorithm for special classes of models,...

CTPS1 inhibition suppresses proliferation and migration in colorectal cancer cells

Fahong Wu, Yudong Mao, Tao Ma, Xiaoli Wang, Hangzhi Wei, Tianwei Wang, Jia Wang & Youcheng Zhang
Colorectal cancer (CRC) is now the third most prevalent tumor and one of the deadliest cancers worldwide, with an increasing prevalence every year. Therefore, we urgently need to understand the mechanisms regulating the progression of colorectal cancer and find potential diagnostic biomarkers. In this study, we performed an analysis using the TCGA and GEO databases to find a molecular biomarker for the diagnosis of CRC, namely CTPS1. The results of this analysis revealed that CTPS1...

sj-docx-1-cat-10.1177_10760296221132551 - Supplemental material for Prescribing Trends of Oral Anticoagulants from 2010 to 2020 in Shanghai, China: A Retrospective Study

Chi Zhang, Jia Wang, Ya Yang, Er-Li Ma, Hou-Wen Lin, Bing-Long Liu & Zhi-Chun Gu
Supplemental material, sj-docx-1-cat-10.1177_10760296221132551 for Prescribing Trends of Oral Anticoagulants from 2010 to 2020 in Shanghai, China: A Retrospective Study by Chi Zhang, Jia Wang, Ya Yang, Er-Li Ma, Hou-Wen Lin, Bing-Long Liu and Zhi-Chun Gu in Clinical and Applied Thrombosis/Hemostasis

Prevalence and molecular characterization of alpha and beta-Thalassemia mutations among Hakka people in southern China

XiangXing Zeng, ZhiFang Liu, CaiHua He, Jia Wang & LiXiang Yan
Abstract Our aim was to investigate molecular features of thalassemia for proper clinical consultation and prevention in Heyuan. In our research, a total of 25,437 positive screening subjects were further subjected to a genetic analysis of α-thalassemia (α-thal) and β-thalassemia (β-thal). The deletion of α-thal mutation was tested by Gap-PCR, while the non-deletion of α-thal and β-thal mutation were identified by the PCR-reverse dot blot (PCR-RDB) technique. Nested PCR detected Hkαα/-- SEA and Hkαα/αα. Among...

Injectable enzyme-catalyzed crosslinking hydrogels as BMSCs-laden tunable scaffold for osteogenic differentiation

Hongwei Pan, Wanxin Li, Yue Qu, Simei Li, Ayixiemu Yusufu, Jia Wang & Lihua Yin
Bone defects caused by trauma or tumor are a significant challenge in clinical practice. Hydrogel-based tissue engineering has been considered an effective strategy. This study successfully formed a series of injectable hydrogels by enzyme-catalyzed crosslinking hyaluronic acid-tyramine (HA-TA) and sodium alginate-tyramine (ALG-TA) under physiological conditions in the presence of both horseradish peroxidase and hydrogen peroxide. The morphology, mechanical properties, swelling properties, and biodegradation properties of hydrogels were investigated. The results showed that the mechanical properties,...

Injectable enzyme-catalyzed crosslinking hydrogels as BMSCs-laden tunable scaffold for osteogenic differentiation

Hongwei Pan, Wanxin Li, Yue Qu, Simei Li, Ayixiemu Yusufu, Jia Wang & Lihua Yin
Bone defects caused by trauma or tumor are a significant challenge in clinical practice. Hydrogel-based tissue engineering has been considered an effective strategy. This study successfully formed a series of injectable hydrogels by enzyme-catalyzed crosslinking hyaluronic acid-tyramine (HA-TA) and sodium alginate-tyramine (ALG-TA) under physiological conditions in the presence of both horseradish peroxidase and hydrogen peroxide. The morphology, mechanical properties, swelling properties, and biodegradation properties of hydrogels were investigated. The results showed that the mechanical properties,...

Additional file 2 of Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis

Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas & Bin Yang
Additional file 2: Table S4. Proteomic analysis of the intracellular and secretome in P. putida KT2440.

Additional file 3 of Understanding of bacterial lignin extracellular degradation mechanisms by Pseudomonas putida KT2440 via secretomic analysis

Zhangyang Xu, Bo Peng, Reta Birhanu Kitata, Carrie D. Nicora, Karl K. Weitz, Yunqiao Pu, Tujin Shi, John R. Cort, Arthur J. Ragauskas & Bin Yang
Additional file 3. A list of abbreviations is included.

Data from: The Physiological Basis for Estimating Photosynthesis from Chlorophyll a Fluorescence

Jimei Han, Lianhong Gu, Yongjiang Zhang & Ying Sun

Registration Year

  • 2022
    41

Resource Types

  • Text
    18
  • Dataset
    17
  • Collection
    6

Affiliations

  • Oak Ridge National Laboratory
    41
  • Zhejiang University
    35
  • Jiangsu Academy of Agricultural Sciences
    27
  • Jilin University
    27
  • Inner Mongolia Agricultural University
    27
  • Southwest University
    27
  • Peking University
    27
  • Second Hospital of Shanxi Medical University
    27
  • University of KwaZulu-Natal
    27
  • Sun Yat-sen University
    24