17 Works

Data from: High-throughput sequencing of transposable element insertions suggests adaptive evolution of the invasive Asian Tiger Mosquito towards temperate environments

Clément Goubert, Hélène Henri, Guillaume Minard, Claire Valiente Moro, Patrick Mavingui, Cristina Vieira & Matthieu Boulesteix
Invasive species represent unique opportunities to evaluate the role of local adaptation during colonization of new environments. Among these species, the Asian tiger mosquito, Aedes albopictus, is a threatening vector of several human viral diseases, including dengue and chikungunya, and raises concerns about the Zika fever. Its broad presence in both temperate and tropical environments has been considered the reflection of great “ecological plasticity.” However, no study has been conducted to assess the role of...

Data from: δ18O-derived incubation temperatures of oviraptorosaur eggs

Romain Amiot, Xu Wang, Shuo Wang, Christophe Lécuyer, Jean-Michel Mazin, Jinyou Mo, Jean-Pierre Flandrois, François Fourel, Xiaolin Wang, Xing Xu, Zhijun Zhang & Zhonghe Zhou
In order to determine the incubation temperature of eggs laid by non-avian dinosaurs, we analysed the oxygen isotope compositions of both eggshell carbonate (δ18Oc) and embryo bone phosphate (δ18Op) from seven oviraptorosaur eggs with preserved in ovo embryo bones. These eggs come from the Upper Cretaceous Nanxiong Formation of Jiangxi Province, China. Oviraptorosaur theropods were selected because of their known brooding behaviour as evidenced by preserved adult specimens fossilized in brooding posture on their clutch....

Data from: Introduction history overrides social factors in explaining genetic structure of females in Mediterranean mouflon

Elodie Portanier, Mathieu Garel, Sebastien Devillard, Pascal Marchand, Julie Andru, Daniel Maillard & Gilles Bourgoin
Fine-scale spatial genetic structure of populations results from social and spatial behaviors of individuals such as sex-biased dispersal and philopatry. However, the demographic history of a given population can override such socio-spatial factors in shaping genetic variability when bottlenecks or founder events occurred in the population. Here, we investigated whether socio-spatial organization determines the fine-scale genetic structure for both sexes in a Mediterranean mouflon (Ovis gmelini musimon×Ovis sp.) population in southern France 60 years after...

Data from: Evaluating the accuracy of biodiversity changes through geological times: from simulation to solution

Corentin Gibert & Gilles Escarguel
Estimating biodiversity and its variations through geologic time is a notoriously difficult task, due to several taphonomic and methodological effects that make the reconstructed signal potentially distinct from the unknown, original one. Through a simulation approach, we examine the effect of a major, surprisingly still understudied, source of potential disturbance: the effect of time discretization through biochronological construction, which generates spurious coexistences of taxa within discrete time intervals (i.e., biozones), and thus potentially makes continuous-...

Data from: A single multiplex of twelve microsatellite markers for the simultaneous study of the brown hare (Lepus europaeus) and the mountain hare (Lepus timidus)

Marie-Pauline Beugin, Jérôme Letty, Cécile Kaerle, Jean-Sébastien Guitton, Lina Muselet, Guillaume Queney & Dominique Pontier
The management of hunted species is challenging, as it must conciliate the conservation of species and their sustainable exploitation. Non-genetic tools are widely used in this context but they may present limitations notably when species can hybridize or when large-scale spatial monitoring is required to establish optimal management actions. This is why genetic tools have been more and more integrated in wildlife management practices. However, the markers proposed are often amplified in small multiplexes when...

Data from: Non-traditional isotope perspectives in vertebrate palaeobiology

Jeremy E. Martin, Theo Tacail & Vincent Balter
The recent development of multi-collector inductively coupled plasma mass spectrometry (MC-ICP-MS) notably in the disciplines of earth sciences, now allows the precise measurement of isotope ratios, even at low concentration. Non-traditional isotope systems, such as alkaline earth (Ca, Mg) and transition (Cu, Fe, Zn) metals are now being measured in a variety of biological tissues, including bone and teeth. Although our understanding of the environmental and biological mechanisms behind the fractionation of such elements is...

Data from: Metabarcoding for the parallel identification of several hundred predators and their preys: application to bat species diet analysis

Maxime Galan, Jean-Baptiste Pons, Orianne Tournayre, Eric Pierre, Maxime Leuchtmann, Dominique Pontier & Nathalie Charbonnel
Assessing diet variability is of main importance to better understand the biology of bats and design conservation strategies. Although the advent of metabarcoding has facilitated such analyses, this approach does not come without challenges. Biases may occur throughout the whole experiment, from fieldwork to biostatistics, resulting in the detection of false negatives, false positives or low taxonomic resolution. We detail a rigorous metabarcoding approach based on a short COI minibarcode and two-step PCR protocol enabling...

Data from: Quantifying individual heterogeneity and its influence on life-history trajectories: different methods for different questions and contexts

Sandra Hamel, Jean-Michel Gaillard, Mathieu Douhard, Marco Festa-Bianchet, Fanie Pelletier & Nigel G. Yoccoz
Heterogeneity among individuals influences the life-history trajectories we observe at the population level because viability selection, selective immigration and emigration processes, and ontogeny change the proportion of individuals with specific trait values with increasing age. Here, we review the two main approaches that have been proposed to account for these processes in life-history trajectories, contrasting how they quantify ontogeny and selection, and proposing ways to overcome some of their limitations. Nearly all existing approaches to...

Data from: Testing determinants of the annual individual fitness: an overall mean mixture model for de-lifing data

Pierre Dupont, Dominique Allainé, Aurélie Cohas & Roger Pradel
1. The de-lifing method (Coulson et al. 2006), though very promising for studying ecological and evolutionary changes, has been scarcely used to identify factors influential on fitness. 2. Through simulations representative of a variety of iteroparous species, we establish that a two-component normal mixture usually provides a much better representation of de-lifing data than the single normal distribution assumed in classical linear models. 3. To test determinants of the annual individual fitness, we propose the...

Data from: Do cryptic species matter in macroecology? Sequencing European groundwater crustaceans yields smaller ranges but does not challenge biodiversity determinants

David Eme, Maja Zagmajster, Teo Delić, Cene Fiser, Jean-François Flot, Lara Konecny-Dupré, Snaebjorn Palsson, Fabio Stoch, Valerija Zakšek, Christophe J. Douady & Florian Malard
Ecologists increasingly rely on molecular delimitation methods (MMs) to identify species boundaries, thereby potentially increasing the number of putative species because of the presence of morphologically cryptic species. It has been argued that cryptic species could challenge our understanding of what determine large-scale biodiversity patterns which have traditionally been documented from morphology alone. Here, we used morphology and three MMs to derive four different sets of putative species among the European groundwater crustaceans. Then, we...

Data from: Invasive Drosophila suzukii facilitates Drosophila melanogaster infestation and sour rot outbreaks in the vineyards

Antoine Rombaut, Robin Guilhot, Anne Xuereb, Laure Benoit, Marie Pierre Chapuis, Patricia Gibert & Simon Fellous
How do invasive pests affect interactions between members of pre-existing agrosystems? The invasive pest Drosophila suzukii is suspected to be involved in the aetiology of sour rot, a grapevine disease that otherwise develops following Drosophila melanogaster infestation of wounded berries. We combined field observations with laboratory assays to disentangle the relative roles of both Drosophila in disease development. We observed the emergence of numerous D. suzukii, but no D. melanogaster flies, from bunches that started...

Data from: RAD sequencing and genomic simulations resolve hybrid origins within North American Canis

Linda Y. Rutledge, S. Devillard, J. Q. Boone, P. A. Hohenlohe & B. N. White
Top predators are disappearing worldwide, significantly changing ecosystems that depend on top-down regulation. Conflict with humans remains the primary roadblock for large carnivore conservation, but for the eastern wolf (Canis lycaon), disagreement over its evolutionary origins presents a significant barrier to conservation in Canada and has impeded protection for grey wolves (Canis lupus) in the USA. Here, we use 127 235 single-nucleotide polymorphisms (SNPs) identified from restriction-site associated DNA sequencing (RAD-seq) of wolves and coyotes,...

Data from: The cost of growing large: sex-specific costs of post-weaning growth on body mass senescence in a wild mammal

Frédéric Douhard, Jean-Michel Gaillard, Maryline Pellerin, Laurent Jacob & Jean-François Lemaître
Individual body mass often positively correlates with survival and reproductive success, whereas fitness costs of growing large are rarely detected in vertebrates in the wild. Evidence that adult body mass progressively declines with increasing age is accumulating across mammalian populations. Growing fast to a large body can increase the cellular damage accumulated throughout life, leading body growth in early life to be negatively associated with the rate of body mass senescence. Moreover, the onset of...

Data from: Genome-wide analysis of allele frequency change in sunflower crop-wild hybrid populations evolving under natural conditions

Jonathan Corbi, Eric J. Baack, Jennifer M. Dechaine, Gerald Seiler & John M. Burke
Crop-wild hybridization occurs in numerous plant species, and could alter the genetic structure and evolutionary dynamics of wild populations. Studying crop-derived alleles in wild populations is also relevant to assessing/mitigating the risks associated with transgene escape. To date, crop-wild hybridization has generally been examined via short-term studies, typically within a single generation, focusing on few traits or genetic markers. Little is known about patterns of selection on crop-derived alleles over multiple generations, particularly at a...

Data from: Life histories and conservation of long-lived reptiles, an illustration with the American Crocodile (Crocodylus acutus)

Venetia Briggs-Gonzalez, Christophe Bonenfant, Mathieu Basille, Michael Cherkiss, Jeff Beauchamp & Frank Mazzotti
1. Successful species conservation is dependent on adequate estimates of population dynamics, but age-specific demographics are generally lacking for long-lived iteroparous species. Accurate demographic information allows estimation of population growth rate, as well as projection of future population sizes and quantitative analyses of fitness trade-offs involved in evolution of life-history strategies. 2. Here, a long-term capture-recapture study was conducted from 1978-2014 on the American crocodile (Crocodylus acutus) in southern Florida. Over the study period, 7,427...

Data from: Habitat-related variation in the plasticity of a UV sensitive photoreceptor over a small spatial scale in the palmate newt

Jean Secondi, Mélissa Martin, Delphine Goven, Pascal Mège, Stéphane Sourice & Marc Théry
Plastic phenotypes are expected to be favoured in heterogeneous environments compared with stable environments. Sensory systems are interesting to test this theory because they are costly to produce and support, and strong fitness costs are expected if they are not tuned to the local environment. Consistently, the visual system of several species changes with the conditions experienced during early development. However, there is little information on whether the amplitude of the change, i.e. the reaction...

Data from: Anatomy and affinities of a new 535-million-year-old medusozoan from the Kuanchuanpu Formation, South China

Xing Wang, Jian Han, Jean Vannier, Qiang Ou, Xiaoguang Yang, Kentaro Uesugi, Osamu Sasaki & Tsuyoshi Komiya
We describe here Sinaster petalon gen. et sp. nov., a new embryonic form from the c. 535 million-year-old Kuanchuanpu Formation of South China (Ningqiang, Shaanxi Province). The excellent three-dimensional, phosphatic preservation of these microfossils allowed us to use x-ray microtomographic techniques to make accurate reconstructions of their internal structures and to compare their anatomy point-by-point with that of extant cnidarians and other animal groups. Sinaster petalon has anatomical features typical of extant Medusozoa (Cnidaria), such...

Registration Year

  • 2017

Resource Types

  • Dataset


  • University of Lyon System
  • French National Centre for Scientific Research
  • Office National de la Chasse et de la Faune Sauvage
  • Claude Bernard University Lyon 1
  • Institute of Vertebrate Paleontology and Paleoanthropology
  • Capital Normal University
  • Princeton University
  • Université de Sherbrooke
  • University of Georgia
  • The Arctic University of Norway