13 Works

Data from: Ecosystem interactions underlie the spread of avian influenza A viruses with pandemic potential

Justin Bahl, Truc T. Pham, Nichola J. Hill, Islam T. M. Hussein, Eric J. Ma, Bernard C. Easterday, Rebecca A. Halpin, Timothy B. Stockwell, David E. Wentworth, Ghazi Kayali, Scott Krauss, Stacey Schultz-Cherry, Robert G. Webster, Richard J. Webby, Michael D. Swartz, Gavin J. D. Smith & Jonathan A. Runstadler
Despite evidence for avian influenza A virus (AIV) transmission between wild and domestic ecosystems, the roles of bird migration and poultry trade in the spread of viruses remain enigmatic. In this study we integrate ecosystem interactions into a phylogeographic model to assess the contribution of wild and domestic hosts to AIV distribution and persistence. Analysis of globally sampled AIV datasets shows frequent two-way transmission between wild and domestic ecosystems. In general, viral flow from domestic...

Data from: Environmental constraints and call evolution in torrent dwelling frogs

Sandra Goutte, Alain Dubois, Samuel David Howard, Rafael Marquez, Jodi J. Rowley, J. Maximilian Dehling, Philippe Grandcolas, Xiong Rongchuan, Frédéric Legendre & Jodi J. L. Rowley
While acoustic signals are important for communication in many taxa, signal propagation is affected by environmental properties. Strong environmental constraints should drive call evolution, favoring signals with greater transmission distance and content integrity in a given calling habitat. Yet, few empirical studies have verified this prediction, possibly due to a shortcoming in habitat characterization, which is often too broad. Here we assess the potential impact of environmental constraints on the evolution of advertisement call in...

Data from: Distinct BOLD fMRI responses of capsaicin-induced thermal sensation reveal pain-related brain activation in nonhuman primates

Abu Bakar Ali Asad, Stephanie Seah, Richard Baumgartner, Dai Feng, Andres Jensen, Elaine Manigbas, Brian Henry, Andrea Houghton, Jeffrey L. Evelhoch, Stuart W. G. Derbyshire & Chih-Liang Chin
Background: Approximately 20% of the adult population suffer from chronic pain that is not adequately treated by current therapies, highlighting a great need for improved treatment options. To develop effective analgesics, experimental human and animal models of pain are critical. Topically/intra-dermally applied capsaicin induces hyperalgesia and allodynia to thermal and tactile stimuli that mimics chronic pain and is a useful translation from preclinical research to clinical investigation. Many behavioral and self-report studies of pain have...

Data from: Species-habitat relationships and ecological correlates of butterfly abundance in a transformed tropical landscape

Anuj Jain, Felix K. S. Lim & Edward L. Webb
Tropical butterfly conservation strategies often focus on total and/or common species richness to assess the conservation value of a patch or habitat. However, such a strategy overlooks the unique dynamics of rare species. We evaluated the species-habitat relationships of 209 common, intermediate, and rare butterfly species (including morphospecies) across four habitat types (mature, degraded, or fragmented forest, and urban parks) and two patch sizes (<400 ha, ≥400 ha) in Singapore. Common species richness was consistent...

Data from: Genetic variability, local selection and demographic history: genomic evidence of evolving towards allopatric speciation in Asian seabass

Le Wang, Zi YI Wan, Huan Sein Lim &
Genomewide analysis of genetic divergence is critically important in understanding the genetic processes of allopatric speciation. We sequenced RAD tags of 131 Asian seabass individuals of six populations from South-East Asia and Australia/Papua New Guinea. Using 32 433 SNPs, we examined the genetic diversity and patterns of population differentiation across all the populations. We found significant evidence of genetic heterogeneity between South-East Asian and Australian/Papua New Guinean populations. The Australian/Papua New Guinean populations showed a...

Data from: Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates

Victor C. Mason, Gang Li, Patrick Minx, Jurgen Schmitz, Gennady Churakov, Liliya Doronina, Amanda D. Melin, Nathaniel J. Dominy, Norman T-L. Lim, Mark S. Springer, Richard K. Wilson, Wesley C. Warren, Kristofer M. Helgen & William J. Murphy
Colugos are one of the most poorly studied mammals despite their centrality to resolving supraordinal primate relationships. Two described species of these gliding mammals are the sole living members of the order Dermoptera, distributed throughout Southeast Asia. We generated a draft genome sequence for a Sunda colugo and a Philippine colugo reference alignment, and used these to identify colugo-specific genetic changes that were enriched in sensory and musculo-skeletal related genes that likely underlie their nocturnal...

Data from: Bee communities along a prairie restoration chronosequence: similar abundance and diversity, distinct composition

Rebecca K. Tonietto, John S. Ascher & Daniel J. Larkin
Recognition of the importance of bee conservation has grown in response to declines of managed honey bees and some wild bee species. Habitat loss has been implicated as a leading cause of declines, suggesting that ecological restoration is likely to play an increasing role in bee conservation efforts. In the Midwestern USA, restoration of tallgrass prairie has traditionally targeted plant community objectives without explicit consideration for bees. However, restoration of prairie vegetation is likely to...

Data from: Persistence of long-distance, insect-mediated pollen movement for a tropical canopy tree species in remnant forest patches in an urban landscape

Annika M.E. Noreen, Matti A. Niissalo, Shawn K.Y. Lum & Edward L. Webb
As deforestation and urbanization continue at rapid rates in tropical regions, urban forest patches are essential repositories of biodiversity. However, almost nothing is known about gene flow of forest-dependent tree species in urban landscapes. In this study, we investigated gene flow in the insect-pollinated, wind-dispersed tropical tree Koompassia malaccensis in and among three remnant forest patches in the urbanized landscape of Singapore. We genotyped the vast majority of adults (N=179) and a large number of...

Data from: Aggressive jumping spiders make quicker decisions for preferred prey but not at the cost of accuracy

Chia-Chen Chang, Pangilinan Ng & Daiqin Li
There has been an increasing interest in consistent interindividual differences in behavior (i.e., personality) in recent years. However, consistent interindividual differences in cognitive styles remain largely unexplored. Individual differences in cognitive styles are hypothesized to be functionally related to differences in personality types. It is assumed that proactive individuals make faster decisions at the expense of accuracy (i.e., the speed–accuracy trade-offs hypothesis). Here, we investigated the relationship between personality and speed–accuracy trade-off using Portia labiata,...

Data from: Analysis of protein phosphorylation in nerve terminal reveals extensive changes in active zone proteins upon exocytosis

Mahdokht Kohansal-Nodehi, John J. E. Chua, Henning Urlaub, Reinhard Jahn, Dominika Czernik & John JE Chua
Neurotransmitter release is mediated by the fast, calcium-triggered fusion of synaptic vesicles with the presynaptic plasma membrane, followed by endocytosis and recycling of the membrane of synaptic vesicles. While many of the proteins governing these processes are known, their regulation is only beginning to be understood. Here we have applied quantitative phosphoproteomics to identify changes in phosphorylation status of presynaptic proteins in resting and stimulated nerve terminals isolated from the brains of Wistar rats. Using...

Data from: Beyond the Coral Triangle: high genetic diversity and near panmixia in Singapore's populations of the broadcast spawning sea star Protoreaster nodosus

Ywee Chieh Tay, Michelle W.P. Chng, W. W. Genevieve Sew, Frank E. Rheindt, Karenne P.P. Tun, Rudolf Meier & M. W. P. Chng
The Coral Triangle is widely considered the most important centre of marine biodiversity in Asia while areas on its periphery such as the South China Sea, have received much less interest. Here, we demonstrate that a small population of the knobbly sea star Protoreaster nodosus in Singapore has similarly high levels of genetic diversity as comparable Indonesian populations from the Coral Triangle. The high genetic diversity of this population is remarkable because it is maintained...

Data from: Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities

Nicholas K. M. Lim, Ywee Chieh Tay, Amrita Srivathsan, Jonathan W. T. Tan, Jeffrey T. B. Kwik, Bilgenur Baloğlu, Rudolf Meier & Darren C. J. Yeo
Freshwater habitats are of high conservation value and provide a wide range of ecosystem services. Effective management requires regular monitoring. However, conventional methods based on direct observation or specimen collection are so invasive, expensive and labour-intensive that frequent monitoring is uncommon. Here, we test whether the evaluation of environmental DNA (eDNA) from water based on a simple protocol can be used for assessing biodiversity. We use universal metazoan primers for characterizing water eDNA across horizontal...

Data from: Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs

Alana Mary Alexander, Yong-Chao Su, Carl Hirang Oliveros, Karen Veronica Olson, Scott Louis Travers & Rafe M. Brown
The microhylid frog genus Kaloula is an adaptive radiation spanning the edge of the Asian mainland and multiple adjacent island archipelagos, with much of the clade's diversity associated with an endemic Philippine radiation. Relationships among clades from the Philippines, however, remain unresolved. With ultraconserved element (UCE) and mitogenomic data, we identified highly-supported differences in topology and areas of poor resolution, for each marker set. Using the UCE data, we then identified possible instances of contemporary...

Registration Year

  • 2016

Resource Types

  • Dataset


  • National University of Singapore
  • Nanyang Technological University
  • Northwestern University
  • University of Kansas
  • National Museum
  • University of Münster
  • University of California System
  • Duke University
  • University of Minnesota
  • Institut de Systématique, Évolution, Biodiversité