453 Works

Survey of Food Consumption of Households in the United States, Spring 1955.

Rueben Buse & Aaron Johnson

Wisconsin children, incomes and program participation survey (CHIPPS) of 1985

Slave Movement -- Records of Slave Ship Movement Between Africa and the Americas, 1817-1843

Philip D. Curtin & Herbert S. Klein

Bedforms of Thwaites Glacier, West Antarctica: Character and Origin

R.B. Alley, N. Holschuh, D.R. MacAyea, B.R. Parizek, L. Zoet, K. Riverman, A. Muto, K. Christianson, E. Clyne, S. Anandakrishnan & N.T. Stevens
Bedforms of Thwaites Glacier, West Antarctica both record and affect ice flow. Thwaites Glacier flows across the tectonic fabric of the West Antarctic rift system with its bedrock highs and sedimentary basins. Swath radar and seismic surveys of the glacier bed have revealed soft-sediment flutes 100 m or more high extending 15 km or more across basins downglacier from bedrock highs, and ending at prominent hard-bedded moats on stoss sides of the next topographic highs....

Data from: Meta-analytic and economic approaches for evaluation of pesticide impact on Sclerotinia stem rot control and soybean yield in the North Central U.S.

Jaime F. Willbur, Paul Mitchell, Mamadou L. Fall, Adam M. Byrne, Scott Chapman, Crystal M. Floyd, Carl A. Bradley, Keith Ames, Martin I. Chilvers, Nathan Kleczewski, Dean Malvick, Brian Mueller, Daren Mueller, Mehdi Kabbage, Shawn P. Conley & Damon Smith
As complete host resistance in soybean has not been achieved, Sclerotinia stem rot (SSR) caused by Sclerotinia sclerotiorum continues to be of major economic concern for farmers. Thus, chemical control remains a prevalent disease management strategy. Pesticide evaluations were conducted in Illinois, Iowa, Michigan, Minnesota, New Jersey, and Wisconsin from 2009 to 2016, for a total of 25 site-years (n = 2057 plot-level data points). These studies were used in network meta-analyses to evaluate the...

Data from: Next generation lineage discovery: a case study of tuberous Claytonia L.

Thomas R. Stoughton, Ricardo Kriebel, Diana D. Jolles & Robin L. O'Quinn
PREMISE OF THE STUDY: Species formation is an intuitive endpoint of reproductive isolation, but circumscribing taxa that arise during speciation can be difficult because of gene flow, morphological continuity, hybridization or polyploidization, and low sequence variation among newly diverged lineages. Nonetheless, species complexes are ubiquitous and their classification is essential for understanding how diversity influences ecosystem function. METHODS: We used modern sequencing technology to identify lineages of perennial Claytonia L., and assessed correspondence between genetic...

Assessing the effects of elephant foraging on the structure and diversity of an Afrotropical forest

Cooper Rosin, Kendall Beals, Michael Belovitch, Ruby Harrison, Megan Pendred, Megan Sullivan, Nicolas Yao & John Poulsen
African forest elephants (Loxodonta cyclotis) are ecosystem engineers that browse and damage large quantities of vegetation during their foraging and movement. Though elephant trail networks and clearings are conspicuous features of many African forests, the consequences of elephant foraging for forest structure and diversity are poorly documented. In this study in northeastern Gabon, we compare stem size, stem density, proportional damage, species diversity, and species relative abundance of seedlings and saplings in the vicinity of...

Bridging the flux gap: sap flow measurements reveal species-specific patterns of water-use in a tallgrass prairie

Kimberly O'Keefe, David Bell, Katherine McCulloh & Jesse Nippert
Predicting the hydrological consequences following changes in grassland vegetation type (i.e., woody encroachment) requires an understanding of water flux dynamics at high spatiotemporal resolution for predominant species within grassland communities. However, grassland fluxes are typically measured at the leaf or landscape scale, which inhibits our ability to predict how individual species contribute to changing ecosystem fluxes. We used external heat balance sap flow sensors and a hierarchical Bayesian state-space modeling approach to bridge this “flux-gap”...

Data from: Invasion of the Hawaiian Islands by a parasite infecting imperiled stream fishes

Roderick B. Gagne, C. Grace Sprehn, Fernando Alda, Peter B. McIntyre, James F. Gilliam & Michael J. Blum
Points of origin and pathways of spread are often poorly understood for introduced parasites that drive disease emergence in imperiled native species. Co-introduction of parasites with non-native hosts is of particular concern in remote areas like the Hawaiian Islands, where the introduced nematode Camallanus cotti has become the most prevalent parasite of at-risk native stream fishes. In this study, we evaluated the prevailing hypothesis that C. cotti entered the Hawaiian Islands with poeciliid fishes from...

Data from: Spatial variability in tree regeneration after wildfire delays and dampens future bark beetle outbreaks

Rupert Seidl, Daniel C. Donato, Kenneth F. Raffa & Monica G. Turner
Climate change is altering the frequency and severity of forest disturbances such as wildfires and bark beetle outbreaks, thereby increasing the potential for sequential disturbances to interact. Interactions can amplify or dampen disturbances, yet the direction and magnitude of future disturbance interactions are difficult to anticipate because underlying mechanisms remain poorly understood. We tested how variability in postfire forest development affects future susceptibility to bark beetle outbreaks, focusing on mountain pine beetle (Dendroctonus ponderosae) and...

Data from: Nematode-bacteria nutualism: selection within the mutualism supersedes selection outside of the mutualism

Levi T. Morran, McKenna J. Penley, Victoria S. Byrd, Andrew J. Meyer, Timothy S. O'Sullivan, Farrah Bashey-Visser, Heidi Goodrich-Blair, Curtis M. Lively & Farrah Bashey
The coevolution of interacting species can lead to codependent mutualists. Little is known about the effect of selection on partners within verses apart from the association. Here, we determined the effect of selection on bacteria (Xenorhabdus nematophila) both within and apart from its mutualistic partner (a nematode, Steinernema carpocapsae). In nature, the two species cooperatively infect and kill arthropods. We passaged the bacteria either together with (M+), or isolated from (M−), nematodes under two different...

Data from: Ontogenetic responses of four plant species to additive and interactive effects of land-use history, canopy structure and herbivory

Philip G. Hahn & John L. Orrock
The strength of interactions among species is often highly variable in space and time, and a major challenge in understanding context-dependent effects of herbivores lies in disentangling habitat-mediated from herbivore-mediated effects on plant performance. We conducted a landscape-scale experiment that manipulated light availability in woodlands with either a history of agricultural use or no history of agricultural use and coupled this with performance measurements of three life stages on four perennial herbaceous species exposed to...

Data from: Inference of adaptive shifts for multivariate correlated traits

Paul Bastide, Cecile Ane, Stéphane Robin & Mahendra Mariadassou
To study the evolution of several quantitative traits, the classical phylogenetic comparative framework consists of a multivariate random process running along the branches of a phylogenetic tree. The Ornstein-Uhlenbeck (OU) process is sometimes preferred to the simple Brownian Motion (BM) as it models stabilizing selection toward an optimum. The optimum for each trait is likely to be changing over the long periods of time spanned by large modern phylogenies. Our goal is to automatically detect...

Data from: Defining the role of the MADS-box gene, Zea agamous like1, a target of selection during maize domestication

David M. Wills, Zhou Fang, Alessandra M. York, James B. Holland & John F. Doebley
Genomic scans for genes that show the signature of past selection have been widely applied to a number of species and have identified a large number of selection candidate genes. In cultivated maize (Zea mays ssp. mays) selection scans have identified several hundred candidate domestication genes by comparing nucleotide diversity and differentiation between maize and its progenitor, teosinte (Z. mays ssp. parviglumis). One of these is a gene called zea agamous-like1 (zagl1), a MADS-box transcription...

Data from: Statistical evidence for common ancestry: application to primates

David A. Baum, Cécile Ané, Bret Larget, Claudia Solís-Lemus, Lam Si Tung Ho, Peggy Boone, Chloe Drummond, Martin Bontrager, Steven Hunter, Bill Saucier, Chloe P. Drummond, Steven J. Hunter & William Saucier
Since Darwin, biologists have come to recognize that the theory of descent from common ancestry is very well supported by diverse lines of evidence. However, while the qualitative evidence is overwhelming, we also need formal methods for quantifying the evidential support for common ancestry (CA) over the alternative hypothesis of separate ancestry (SA). In this paper we explore a diversity of statistical methods, using data from the primates. We focus on two alternatives to CA,...

Data from: The role of cis regulatory evolution in maize domestication

Zachary H. Lemmon, Robert Bukowski, Qi Sun & John F. Doebley
Gene expression differences between divergent lineages caused by modification of cis regulatory elements are thought to be important in evolution. We assayed genome-wide cis and trans regulatory differences between maize and its wild progenitor, teosinte, using deep RNA sequencing in F1 hybrid and parent inbred lines for three tissue types (ear, leaf and stem). Pervasive regulatory variation was observed with approximately 70% of ~17,000 genes showing evidence of regulatory divergence between maize and teosinte. However,...

Data from: Landscape variation in tree regeneration and snag fall drive fuel loads in 25-yr old post-fire lodgepole pine forests

Kellen N. Nelson, Monica G. Turner, William H. Romme & Daniel B. Tinker
Escalating wildfire in subalpine forests with stand-replacing fire regimes is increasing the extent of early-seral forests throughout the western US. Post-fire succession generates the fuel for future fires, but little is known about fuel loads and their variability in young post-fire stands. We sampled fuel profiles in 24-year-old post-fire lodgepole pine (Pinus contorta var. latifolia) stands (n=82) that regenerated from the 1988 Yellowstone Fires to answer three questions. (1) How do canopy and surface fuel...

Data from: Fire severity unaffected by spruce beetle outbreak in spruce-fir forests in southwestern Colorado

Robert A. Andrus, Thomas T. Veblen, Brian J. Harvey & Sarah J. Hart
Recent large and severe outbreaks of native bark beetles have raised concern among the general public and land managers about potential for amplified fire activity in western North America. To date, the majority of studies examining bark beetle outbreaks and subsequent fire severity in the U.S. Rocky Mountains have focused on outbreaks of mountain pine beetle (MPB, Dendroctonus ponderosae) in lodgepole pine (Pinus contorta) forests, but few studies, particularly field studies, have addressed the effects...

Data from: Convergent evolution of floral shape tied to pollinator shifts in Iochrominae (Solanaceae)

Stacey D. Smith & Ricardo Kriebel
Flower form is one of many floral features thought to be shaped by pollinator-mediated selection. Although the drivers of variation in flower shape have often been examined in microevolutionary studies, relatively few have tested the relationship between shape evolution and shifts in pollination system across clades. In the present study, we use morphometric approaches to quantify shape variation across the Andean clade Iochrominae and estimate the relationship between changes in shape and shifts in pollination...

Data from: Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine-mapping by selective sweep analysis

Nicolas Svetec, Annegret Werzner, Ricardo Wilches, Pavlos Pavlidis, José M. Álvarez-Castro, Karl W. Broman, Dirk Metzler & Wolfgang Stephan
Drosophila melanogaster is a cosmopolitan species that colonizes a great variety of environments. One trait that shows abundant evidence for naturally segregating genetic variance in different populations of D. melanogaster is cold tolerance. Previous work has found quantitative trait loci (QTL) exclusively on the second and the third chromosomes. To gain insight into the genetic architecture of cold tolerance on the X chromosome and to compare the results with our analyses of selective sweeps, a...

Data from: Harvesting biofuel grasslands has mixed effects on natural enemy communities and no effects on biocontrol services

Tania N. Kim, Aaron F. Fox, Bill D. Wills, Timothy D. Meehan, Douglas A. Landis & Claudio Gratton
1.Perennial bioenergy systems, such as switchgrass and restored prairies, are alternatives to commonly used annual monocultures such as maize. Perennial systems require lower chemical input, provide greater ecosystem services such as carbon storage, greenhouse gas mitigation, and support greater biodiversity of beneficial insects. However, biomass harvest will be necessary in managing these perennial systems for bioenergy production, and it is unclear how repeated harvesting might affect ecosystem services. 2.In this study, we examined how repeated...

Data from: Female discrimination thresholds frequently exceed local male display variation: implications for mate choice dynamics and sexual selection

Gerlinde Höbel
Among the factors that can influence female mate choice decisions is the degree to which females differentiate among similar displays: as differences decrease, females are expected to eventually stop discriminating. This discrimination threshold, in conjunction with the magnitude of male trait variation females regularly encounter while making mate choice decisions, may have important consequences for sexual selection. If local display variation is above the discrimination threshold, female preferences should translate into higher mating success for...

Data from: Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae): Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid

David M. Spooner, Holly Ruess, Massimo Iorizzo, Douglas Senalik & Philipp Simon
PREMISE OF THE STUDY: We explored the phylogenetic utility of entire plastid DNA sequences in Daucus and compared the results with prior phylogenetic results using plastid and nuclear DNA sequences. METHODS: We used Illumina sequencing to obtain full plastid sequences of 37 accessions of 20 Daucus taxa and outgroups, analyzed the data with phylogenetic methods, and examined evidence for mitochondrial DNA transfer to the plastid (DcMP). KEY RESULTS: Our phylogenetic trees of the entire data...

Data from: Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica

Thomas J. Givnish, Alejandro Zuluaga, Isabel Marques, Vivienne K. Y. Lam, Marybel Soto Gomez, William J. D. Iles, Mercedes Ames, Daniel Spalink, Jackson R. Moeller, Barbara G. Briggs, Stephanie P. Lyon, Dennis W. Stevenson, Wendy Zomlefer & Sean W. Graham
We present the first phylogenomic analysis of relationships among all ten families of Liliales, based on 75 plastid genes from 35 species in 29 genera, and 97 additional plastomes stratified across angiosperm lineages. We used a supermatrix approach to extend our analysis to 58 of 64 genera of Liliales, and calibrated the resulting phylogeny against 17 fossil dates to produce a new timeline for monocot evolution. Liliales diverged from other monocots 124 Mya and began...

Data from: Behavior and nutritional condition buffer a large-bodied endotherm against direct and indirect effects of climate

Ryan A. Long, R. Terry Bowyer, Warren P. Porter, Paul Mathewson, Kevin Lee Monteith & John G. Kie
Temporal changes in net energy balance of animals strongly influence fitness; consequently, natural selection should favor behaviors that increase net energy balance by buffering individuals against negative effects of environmental variation. The relative importance of behavioral responses to climate-induced variation in costs versus supplies of energy, however, is uncertain, as is the degree to which such responses are mediated by current stores of energy. We evaluated relationships among behavior, nutritional condition (i.e., energetic state), and...

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