844 Works

Data from: Day/night upper thermal limits differ within Ectatomma ruidum ant colonies

Annika S. Nelson, Trey Scott, Maciej Barczyk, Terrence P. McGlynn, Arian Avalos, Elizabeth Clifton, Amlan Das, Andreia Figueiredo, Laura L. Figueroa, Mark Janowiecki, Sarah Pahlke, Jignasha D. Rana & Sean O'Donnell
In the tropics, daily temperature fluctuations can pose physiological challenges for ectothermic organisms, and upper thermal limits may affect foraging activity over the course of the day. Variation in upper thermal limits can occur among and within species, and for social insects such as ants, within colonies. Within colonies, upper thermal limits may differ among individuals or change for an individual throughout the day. Daytime foragers of the Neotropical ant Ectatomma ruidum have higher critical...

Data from: Little white lies: pericarp color provides insights into the origins and evolution of Southeast Asian weedy rice

Yongxia Cui, Beng Kah Song, Lin-Feng Li, Ya-Ling Li, Zhongyun Huang, Ana L. Caicedo, Yulin Jia & Kenneth M. Olsen
Weedy rice is a conspecific form of cultivated rice (Oryza sativa L.) that infests rice fields and results in severe crop losses. Weed strains in different world regions appear to have originated multiple times from different domesticated and/or wild rice progenitors. In the case of Malaysian weedy rice, a multiple-origin model has been proposed based on neutral markers and analyses of domestication genes for hull color and seed shattering. Here we examined variation in pericarp...

Data from: Evolution of ecological dominance of yeast species in high-sugar environments

Kathryn M. Williams, Ping Liu & Justin C. Fay
In budding yeasts, fermentation in the presence of oxygen evolved around the time of a whole genome duplication (WGD) and is thought to confer dominance in high-sugar environments because ethanol is toxic to many species. While there are many fermentative yeast species, only Saccharomyces cerevisiae consistently dominates wine fermentations. In this study, we use co-culture experiments and intrinsic growth rate assays to examine the relative fitness of non-WGD and WGD yeast species across environments to...

Data from: Size variation, growth strategies and the evolution of modularity in the mammalian skull

Arthur Porto, Leila Teruko Shirai, Felipe Bandoni De Oliveira & Gabriel Marroig
Allometry is a major determinant of within-population patterns of association among traits and, therefore, a major component of morphological integration studies. Even so, the influence of size variation over evolutionary change has been largely unappreciated. Here, we explore the interplay between allometric size variation, modularity, and life history strategies in the skull from representatives of 35 mammalian families. We start by removing size variation from within-species data and analyzing its influence on integration magnitudes, modularity...

Data from: Mental illness, poverty and stigma in India: a case control study

Jean-Francois Trani, Parul Bakhshi, Jill Kuhlberg, Sreelatha S. Venkataraman, Hemalatha Venkataraman, Nagendra N. Mishra, Nora E. Groce, Sushrut Jadhav & Smita Deshpande
Objective: To assess the effect of experienced stigma on depth of multidimensional poverty of persons with severe mental illness (PSMI) in Delhi, India, controlling for gender, age and caste. Design: Matching case (hospital)–control (population) study. Setting: University Hospital (cases) and National Capital Region (controls), India. Participants: A case–control study was conducted from November 2011 to June 2012. 647 cases diagnosed with schizophrenia or affective disorders were recruited and 647 individuals of same age, sex and...

Wild Dictyostelium discoideum social amoebae show plastic responses to the presence of nonrelatives during multicellular development

Suegene Noh, Lauren Christopher, Joan Strassmann & David Queller
When multiple strains of microbes form social groups, such as the multicellular fruiting bodies of Dictyostelium discoideum, conflict can arise regarding cell fate. Both fixed and plastic differences among strains can contribute to cell fate, and plastic responses may be particularly important if social environments frequently change. We used RNA-sequencing and photographic time series analysis to detect possible conflict-induced plastic differences between wild D. discoideum aggregates formed by single strains compared to mixed pairs of...

Genetic drift does not sufficiently explain patterns of electric signal variation among populations of the mormyrid electric fish Paramormyrops kingsleyae

Jason Gallant, Sophie Picq, Joshua H Sperling, Catherine Cheng & Bruce Carlson
Communication signals serve crucial survival and reproductive functions. In Gabon, the widely distributed mormyrid fish Paramormyrops kingsleyae emits an electric organ discharge (EOD) signal with a dual role in communication and electrolocation that exhibits remarkable variation: populations of P. kingsleyae have either biphasic or triphasic EODs, a feature which characterizes interspecific signal diversity among the Paramormyrops genus. We quantified variation in EODs of 327 P. kingsleyae from 9 populations and compared it to genetic variation...

Data from: Detecting sub-micron space weathering effects in lunar grains with synchrotron infrared nanospectroscopy

Kainen Utt, Ryan Ogliore, Hans Bechtel, Jeffrey Gillis-Davis & Brad Jolliff
Space weathering processes induce changes to the physical, chemical, and optical properties of space-exposed soil grains. For the Moon, space weathering causes reddening, darkening, and diminished contrast in reflectance spectra over visible and near-infrared wavelengths. The physical and chemical changes responsible for these optical effects occur on scales below the diffraction limit of traditional far-field spectroscopic techniques. Recently developed super-resolution spectroscopic techniques provide an opportunity to understand better the optical effects of space weathering on...

Habitat structure mediates vulnerability to climate change through its effects on thermoregulatory behavior

Lauren Neel, Michael Logan, Daniel Nicholson, Christina Miller, Albert Chung, Inbar Maayan, Zach Degon, Madeline DuBois, John David Curlis, Q Taylor, Kaitlin Keegan, Owen McMillan, Jonathan Losos & Christian Cox
Tropical ectotherms are thought to be especially vulnerable to climate change because they are thermal specialists, having evolved in aseasonal thermal environments. However, even within the tropics, habitat structure can influence opportunities for behavioral thermoregulation. Open (and edge) habitats likely promote more effective thermoregulation due to the high spatial heterogeneity of the thermal landscape, while forests are thermally homogenous and may constrain opportunities for behavioral buffering of environmental temperatures. Nevertheless, the ways in which behavior...

RNA sequencing of sorted conducting airway epithelial cells from FGF9-overexpressing and control mouse lungs at 1 day post-infection with IAV

Bradley Hiller
Influenza A virus (IAV) preferentially infects conducting airway and alveolar epithelial cells in the lung. The outcome of these infections is impacted by the host response, including the production of various cytokines, chemokines, and growth factors. Fibroblast growth factor-9 (FGF9) is required for lung development, can display antiviral activity in vitro, and is upregulated in asymptomatic patients during early IAV infection. We therefore hypothesized that FGF9 would protect the lungs from respiratory virus infection and...

Evolution in response to climate in the native and introduced ranges of a globally distributed plant

Simon Innes, James Santangelo, Nicholas Kooyers, Kenneth Olsen & Marc Johnson
The extent to which species can adapt to spatiotemporal climatic variation in their native and introduced ranges remains unresolved. To address this, we examined how clines in cyanogenesis (HCN production—an antiherbivore defense associated with decreased tolerance to freezing) have shifted in response to climatic variation in space and time over a 60-year period in both the native and introduced ranges of Trifolium repens. HCN production is a polymorphic trait controlled by variation at two Mendelian...

Data from: Climate change is associated with increased allocation to potential outcrossing in a common mixed mating species

Matthew Austin, Piper Cole, Kenneth Olsen & Adam Smith
Premise: The balance between cross- and self-fertilization is driven by the environment. Yet no long-term study has documented whether anthropogenic climate change is affecting reproductive strategy allocation in species with mixed mating systems. Here, we test whether the common blue violet (Viola sororia; Violaceae) has altered relative allocation to the production of potentially outcrossing flowers as the climate has changed across the 20th century. Methods: Using herbarium records spanning 1875 to 2015 from the central...

Phylogeographic and phenotypic outcomes of brown anole colonization across the Caribbean provide insight into the beginning stages of an adaptive radiation

Jason J. Kolbe, Richard E. Glor, Marta López‐Darias, C. Verónica Gómez Pourroy, Alexis S. Harrison, Kevin De Queiroz, Liam J. Revell, Jonathan B. Losos & Robert Graham Reynolds
Some of the most important insights into the ecological and evolutionary processes of diversification and speciation have come from studies of island adaptive radiations, yet relatively little research has examined how these radiations initiate. We suggest that Anolis sagrei is a candidate for understanding the origins of the Caribbean Anolis adaptive radiation and how a colonizing anole species begins to undergo allopatric diversification, phenotypic divergence and, potentially, speciation. We undertook a genomic and morphological analysis...

A new method to reconstruct quantitative food webs and nutrient flows from isotope tracer addition experiments

Andres Lopez-Sepulcre, Matthieu Bruneaux, Sarah Michelle Collins, Rana El-Sabaawi, Alexander S Flecker & Steven A Thomas
Understanding how nutrients flow through food webs is central in ecosystem ecology. Tracer addition experiments are powerful tools to reconstruct nutrient flows by adding an isotopically enriched element into an ecosystem, and tracking its fate through time. Historically, the design and analysis of tracer studies have varied widely, ranging from descriptive studies to modeling approaches of varying complexity. Increasingly, isotope tracer data is being used being used to compare ecosystems and analyze experimental manipulations. Currently,...

Untangling the importance of niche breadth and niche position as drivers of tree species abundance and occupancy across biogeographic regions

Dilys M. Vela Díaz, Cecilia Blundo, Leslie Cayola, Alfredo F. Fuentes, Lucio R. Malizia & Jonathan A. Myers
Aim: Ecological niches shape species commonness and rarity, yet the relative importance of different niche mechanisms within and across ecosystems remains unresolved. We tested the influence of niche breadth (range of environmental conditions where species occur) and niche position (marginality of a species’ environmental distribution relative to the mean environmental conditions of a region) on tree-species abundance and occupancy across three biogeographic regions. Location: Argentinian Andes; Bolivian Amazon; Missouri Ozarks. Time period: 2002–2010. Major taxa...

Aboveground carbon stocks and dynamics in Andean forests

Alvaro Duque, Miguel Peña, Francisco Cuesta, Sebastián González-Caro, Peter Kennedy, Oliver Phillips, Marco Calderón, Cecilia Blundo, Julieta Carilla, Leslie Cayola, William Farfán-Ríos, Alfredo Fuentes, Ricardo Grau, Jürgen Homeier, María I. Loza-Rivera, Jonathan A. Myers, Oriana Osinaga-Acosta, Manuel Peralvo, Esteban Pinto, Sassan Saatchi, Miles Silman, J. Sebastián Tello, Andrea Terán-Valdez & Kenneth J. Feeley
This dataset (Andean_AGB.xlsx) has the data employed in the paper entitled Old-growth Andean forests as globally important carbon sinks and future carbon refuges. The data was compiled as the results of the work of several research teams spread out across the Andean region. The information available here has data about aboveground carbon stocks and dynamics and the main explanatory variables, such as climate and symbiotic root associations.

Data From: TERRA-REF, An open reference data set from high resolution genomics, phenomics, and imaging sensors

David LeBauer, Burnette Maxwell, Jeffrey Demieville, Noah Fahlgren, Andrew French, Roman Garnett, Zhenbin Hu, Kimberly Huynh, Rob Kooper, Zongyang Li, Maitiniyazi Maimaitijiang, Jerome Mao, Todd Mockler, Geoffrey Morris, Maria Newcomb, Michael Ottman, Philip Ozersky, Sidike Paheding, Duke Pauli, Robert Pless, Wei Qin, Kristina Riemer, Gareth Rohde, William Rooney, Vasit Sagan … & Charles Zender
The ARPA-E funded TERRA-REF project is generating open-access reference datasets for the study of plant sensing, genomics, and phenomics. Sensor data were generated by a field scanner sensing platform that captures color, thermal, hyperspectral, and active flourescence imagery as well as three dimensional structure and associated environmental measurements. This dataset is provided alongside data collected using traditional field methods in order to support calibration and validation of algorithms used to extract plot level phenotypes from...

An aerodynamic perspective on hurricane-induced selection on Anolis lizards

Shamil Debaere, Colin Donihue, Anthony Herrel & Sam Van Wassenbergh
Studies have demonstrated that hurricanes can drive selection in Neotropical anoles. In a recent study it was shown that post-hurricane survivors showed increased toepad areas, and surprisingly, shorter femurs. One potential explanation for the reduction in femur length is that increased drag on individuals with longer femurs causes them to be blown off their perch. Consequently, lizards with shorter femora might survive better in hurricanes. To gain insight into the form-function relationships of drag-reduction in...

Scripts for analyzing Paspalum vaginatum GBS data

David Goad
Seashore paspalum (Paspalum vaginatum Swartz) is a halophytic turfgrass and emerging genomic model system for the study of salt tolerance in cereals and other grasses. Despite recent interest and an increase in available tools, little is known about the diversity present in wild populations of P. vaginatum and its close relative P. distichum. Variation in ploidy, clonal propagation, hybridization, and subgenome composition appear to occur in the wild and may interact to influence geographic patterns...

Filtered SNPs for wild Paspalum vaginatum and Paspalum distichum

David Goad
Filtered SNP calls in .ped format from "Hybridization, polyploidy and clonality influence geographic patterns of diversity and salt tolerance in the model halophyte seashore paspalum (Paspalum vaginatum)". We used GBS to genotype 218 P. vaginatum and P. distichum accessions collected from the US Gulf and Atlantic coasts plus available USDA germplasm. We confirm that P. vaginatum and P. distichum are genetically distinct and that the coarse-textured ecotype of P. vaginatum is composed of hybrids between...

Gene expression profiles compared in environmental and malnutrition enteropathy in Zambian children and adults

Paul Kelly, Mubanga Chama, Beatrice Amadi, Kanta Chandwe, Ellen Besa, Kanekwa Zyambo, Phillip I. Tarr, Nurmohammad Shaikh, I Malick Ndao, Chad Storer & Richard Head
Background: Environmental enteropathy (EE) contributes to growth failure in millions of children worldwide, but its relationship to clinical malnutrition has not been elucidated. We used RNA sequencing to compare duodenal biopsies from adults and children with EE, and from children with severe acute malnutrition (SAM), to define key features of these malnutrition-related enteropathies. Methods: RNA was extracted and sequenced from biopsies of children with SAM in hospital (n=27), children with non-responsive stunting in the community...

Mental Health Service Use Of Youth Leaving Foster Care (Voyages) 2001-2003

Curtis McMillen, Lionel Scott & Wendy Fran Auslander
The study was funded to explore the changes in mental health service use as older youth leave the foster care system. The data, however, examine many parameters of the lives of older youth in the foster care system, from their perspective. Four-hundred six youth in the Missouri foster care system were interviewed in person near their 17th birthday. They were re-interviewed when possible every three months until their 19th birthday. Eighty percent of the youth...

Peck ranch collared lizard files

Alan Templeton
Eastern collared lizards (Crotophytus collaris collaris) were a Missouri state endangered species when this study began in 1982 due to massive local extinction on glades in the Ozarks in central North America. Translocation coupled with glade restoration was initiated in the 1980’s, including reintroductions starting in 1984 on Stegall Mountain in southern Missouri. The translocated populations underwent three distinct demographic phases: 1) an isolate phase with no net growth in population size, no colonization of...

But They Are Not Real

Takura Suzuki

Registration Year

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Affiliations

  • Washington University in St. Louis
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